| Full name: vesicle associated membrane protein 3 | Alias Symbol: CEB | ||
| Type: protein-coding gene | Cytoband: 1p36.23 | ||
| Entrez ID: 9341 | HGNC ID: HGNC:12644 | Ensembl Gene: ENSG00000049245 | OMIM ID: 603657 |
| Drug and gene relationship at DGIdb | |||
Expression of VAMP3:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | VAMP3 | 9341 | 201336_at | -0.1687 | 0.7211 | |
| GSE20347 | VAMP3 | 9341 | 201336_at | -0.6789 | 0.0000 | |
| GSE23400 | VAMP3 | 9341 | 201336_at | -0.1748 | 0.0059 | |
| GSE26886 | VAMP3 | 9341 | 201336_at | -0.2901 | 0.1602 | |
| GSE29001 | VAMP3 | 9341 | 201336_at | -0.5221 | 0.1347 | |
| GSE38129 | VAMP3 | 9341 | 201336_at | -0.5424 | 0.0000 | |
| GSE45670 | VAMP3 | 9341 | 201336_at | -0.2976 | 0.1036 | |
| GSE53622 | VAMP3 | 9341 | 20097 | -0.3053 | 0.0000 | |
| GSE53624 | VAMP3 | 9341 | 20097 | -0.4167 | 0.0000 | |
| GSE63941 | VAMP3 | 9341 | 201336_at | -0.9155 | 0.0874 | |
| GSE77861 | VAMP3 | 9341 | 201336_at | -0.4803 | 0.1030 | |
| GSE97050 | VAMP3 | 9341 | A_23_P97532 | 0.1513 | 0.5101 | |
| SRP007169 | VAMP3 | 9341 | RNAseq | -1.6110 | 0.0000 | |
| SRP008496 | VAMP3 | 9341 | RNAseq | -1.2666 | 0.0000 | |
| SRP064894 | VAMP3 | 9341 | RNAseq | -0.1830 | 0.1021 | |
| SRP133303 | VAMP3 | 9341 | RNAseq | -0.0522 | 0.7732 | |
| SRP159526 | VAMP3 | 9341 | RNAseq | -0.6549 | 0.0003 | |
| SRP193095 | VAMP3 | 9341 | RNAseq | -0.6238 | 0.0000 | |
| SRP219564 | VAMP3 | 9341 | RNAseq | -0.6376 | 0.0538 | |
| TCGA | VAMP3 | 9341 | RNAseq | -0.0135 | 0.7635 |
Upregulated datasets: 0; Downregulated datasets: 2.
Survival by VAMP3 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of VAMP3:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | VAMP3 | 9341 | 2 | 5 | 23 | |
| GSE20123 | VAMP3 | 9341 | 2 | 4 | 24 | |
| GSE43470 | VAMP3 | 9341 | 6 | 5 | 32 | |
| GSE46452 | VAMP3 | 9341 | 7 | 1 | 51 | |
| GSE47630 | VAMP3 | 9341 | 8 | 4 | 28 | |
| GSE54993 | VAMP3 | 9341 | 3 | 2 | 65 | |
| GSE54994 | VAMP3 | 9341 | 14 | 3 | 36 | |
| GSE60625 | VAMP3 | 9341 | 0 | 0 | 11 | |
| GSE74703 | VAMP3 | 9341 | 5 | 3 | 28 | |
| GSE74704 | VAMP3 | 9341 | 2 | 0 | 18 | |
| TCGA | VAMP3 | 9341 | 11 | 22 | 63 |
Total number of gains: 60; Total number of losses: 49; Total Number of normals: 379.
Somatic mutations of VAMP3:
Generating mutation plots.
Highly correlated genes for VAMP3:
Showing top 20/901 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| VAMP3 | RHBDD1 | 0.821962 | 3 | 0 | 3 |
| VAMP3 | LIPT1 | 0.811161 | 3 | 0 | 3 |
| VAMP3 | NUDT16 | 0.794813 | 3 | 0 | 3 |
| VAMP3 | ZNF227 | 0.782783 | 3 | 0 | 3 |
| VAMP3 | PSMA5 | 0.768073 | 3 | 0 | 3 |
| VAMP3 | TPRG1L | 0.767387 | 8 | 0 | 8 |
| VAMP3 | HACL1 | 0.756887 | 3 | 0 | 3 |
| VAMP3 | TRAPPC8 | 0.756773 | 4 | 0 | 4 |
| VAMP3 | ZCCHC17 | 0.739448 | 3 | 0 | 3 |
| VAMP3 | HIC2 | 0.731603 | 3 | 0 | 3 |
| VAMP3 | SCFD1 | 0.726714 | 3 | 0 | 3 |
| VAMP3 | LYRM1 | 0.725106 | 4 | 0 | 4 |
| VAMP3 | ZNF12 | 0.721078 | 3 | 0 | 3 |
| VAMP3 | SLC25A27 | 0.72045 | 3 | 0 | 3 |
| VAMP3 | IRAK2 | 0.719739 | 3 | 0 | 3 |
| VAMP3 | C9orf78 | 0.715543 | 3 | 0 | 3 |
| VAMP3 | GLIS3 | 0.71435 | 3 | 0 | 3 |
| VAMP3 | PPP2R3C | 0.708686 | 4 | 0 | 3 |
| VAMP3 | ATP11B | 0.706022 | 5 | 0 | 4 |
| VAMP3 | THBS4 | 0.704955 | 3 | 0 | 3 |
For details and further investigation, click here
