| Full name: VPS9 domain containing 1 | Alias Symbol: ATP-BL | ||
| Type: protein-coding gene | Cytoband: 16q24.3 | ||
| Entrez ID: 9605 | HGNC ID: HGNC:13526 | Ensembl Gene: ENSG00000075399 | OMIM ID: |
Expression of VPS9D1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | VPS9D1 | 9605 | 205781_at | 0.0358 | 0.9673 | |
| GSE20347 | VPS9D1 | 9605 | 205781_at | -0.4781 | 0.0022 | |
| GSE23400 | VPS9D1 | 9605 | 205781_at | -0.3435 | 0.0000 | |
| GSE26886 | VPS9D1 | 9605 | 205781_at | -0.5926 | 0.0103 | |
| GSE29001 | VPS9D1 | 9605 | 205781_at | -0.4204 | 0.0843 | |
| GSE38129 | VPS9D1 | 9605 | 205781_at | -0.3004 | 0.0142 | |
| GSE45670 | VPS9D1 | 9605 | 205781_at | 0.2231 | 0.0930 | |
| GSE53622 | VPS9D1 | 9605 | 36850 | -0.8315 | 0.0000 | |
| GSE53624 | VPS9D1 | 9605 | 36850 | -0.7320 | 0.0000 | |
| GSE63941 | VPS9D1 | 9605 | 205781_at | -1.4563 | 0.0000 | |
| GSE77861 | VPS9D1 | 9605 | 205781_at | -0.0943 | 0.6477 | |
| SRP007169 | VPS9D1 | 9605 | RNAseq | -1.6390 | 0.0002 | |
| SRP008496 | VPS9D1 | 9605 | RNAseq | -1.8491 | 0.0000 | |
| SRP064894 | VPS9D1 | 9605 | RNAseq | -0.2031 | 0.3666 | |
| SRP133303 | VPS9D1 | 9605 | RNAseq | -0.2099 | 0.4216 | |
| SRP159526 | VPS9D1 | 9605 | RNAseq | -0.8480 | 0.0056 | |
| SRP193095 | VPS9D1 | 9605 | RNAseq | -0.0952 | 0.5998 | |
| SRP219564 | VPS9D1 | 9605 | RNAseq | -0.5665 | 0.1080 |
Upregulated datasets: 0; Downregulated datasets: 3.
Survival by VPS9D1 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of VPS9D1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | VPS9D1 | 9605 | 4 | 3 | 23 | |
| GSE20123 | VPS9D1 | 9605 | 4 | 3 | 23 | |
| GSE43470 | VPS9D1 | 9605 | 1 | 13 | 29 | |
| GSE46452 | VPS9D1 | 9605 | 38 | 1 | 20 | |
| GSE47630 | VPS9D1 | 9605 | 11 | 9 | 20 | |
| GSE54993 | VPS9D1 | 9605 | 3 | 4 | 63 | |
| GSE54994 | VPS9D1 | 9605 | 9 | 11 | 33 | |
| GSE60625 | VPS9D1 | 9605 | 4 | 0 | 7 | |
| GSE74703 | VPS9D1 | 9605 | 1 | 9 | 26 | |
| GSE74704 | VPS9D1 | 9605 | 3 | 1 | 16 | |
| TCGA | VPS9D1 | 9605 | 26 | 15 | 55 |
Total number of gains: 104; Total number of losses: 69; Total Number of normals: 315.
Somatic mutations of VPS9D1:
Generating mutation plots.
Highly correlated genes for VPS9D1:
Showing top 20/369 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| VPS9D1 | AFP | 0.651858 | 4 | 0 | 4 |
| VPS9D1 | ANKRD35 | 0.651024 | 4 | 0 | 4 |
| VPS9D1 | RAB24 | 0.6465 | 6 | 0 | 6 |
| VPS9D1 | ARHGAP20 | 0.63981 | 3 | 0 | 3 |
| VPS9D1 | ATP10B | 0.632903 | 9 | 0 | 9 |
| VPS9D1 | SNX33 | 0.627734 | 4 | 0 | 4 |
| VPS9D1 | LRRC66 | 0.625903 | 3 | 0 | 3 |
| VPS9D1 | DUOX2 | 0.622392 | 9 | 0 | 6 |
| VPS9D1 | PCSK7 | 0.621555 | 7 | 0 | 6 |
| VPS9D1 | MAST4 | 0.619783 | 9 | 0 | 7 |
| VPS9D1 | PDZK1IP1 | 0.618857 | 10 | 0 | 9 |
| VPS9D1 | PCDH1 | 0.615851 | 9 | 0 | 8 |
| VPS9D1 | ITPKC | 0.615536 | 10 | 0 | 8 |
| VPS9D1 | TSC22D4 | 0.615469 | 4 | 0 | 3 |
| VPS9D1 | NLRX1 | 0.612117 | 8 | 0 | 7 |
| VPS9D1 | HS3ST1 | 0.610258 | 6 | 0 | 6 |
| VPS9D1 | TGM1 | 0.609922 | 9 | 0 | 9 |
| VPS9D1 | SLC25A41 | 0.609256 | 3 | 0 | 3 |
| VPS9D1 | BDKRB2 | 0.608728 | 7 | 0 | 7 |
| VPS9D1 | SHISA5 | 0.607451 | 5 | 0 | 4 |
For details and further investigation, click here
