| Full name: ATP binding cassette subfamily A member 13 | Alias Symbol: FLJ33876|FLJ33951 | ||
| Type: protein-coding gene | Cytoband: 7p12.3 | ||
| Entrez ID: 154664 | HGNC ID: HGNC:14638 | Ensembl Gene: ENSG00000179869 | OMIM ID: 607807 |
| Drug and gene relationship at DGIdb | |||
Expression of ABCA13:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | ABCA13 | 154664 | 1553605_a_at | 1.6732 | 0.4791 | |
| GSE26886 | ABCA13 | 154664 | 1553605_a_at | 2.8569 | 0.0004 | |
| GSE45670 | ABCA13 | 154664 | 1553605_a_at | 3.7436 | 0.0001 | |
| GSE53622 | ABCA13 | 154664 | 53291 | 0.8829 | 0.0003 | |
| GSE53624 | ABCA13 | 154664 | 100157 | 1.8539 | 0.0000 | |
| GSE63941 | ABCA13 | 154664 | 1553605_a_at | 2.3752 | 0.1699 | |
| GSE77861 | ABCA13 | 154664 | 1553605_a_at | 2.5118 | 0.0004 | |
| GSE97050 | ABCA13 | 154664 | A_23_P364324 | 0.2755 | 0.2324 | |
| SRP007169 | ABCA13 | 154664 | RNAseq | 3.8636 | 0.0000 | |
| SRP008496 | ABCA13 | 154664 | RNAseq | 3.8198 | 0.0000 | |
| SRP064894 | ABCA13 | 154664 | RNAseq | 2.3815 | 0.0000 | |
| SRP133303 | ABCA13 | 154664 | RNAseq | 2.6364 | 0.0008 | |
| SRP159526 | ABCA13 | 154664 | RNAseq | 2.9690 | 0.0000 | |
| SRP193095 | ABCA13 | 154664 | RNAseq | 2.7735 | 0.0000 | |
| SRP219564 | ABCA13 | 154664 | RNAseq | 2.6273 | 0.0116 | |
| TCGA | ABCA13 | 154664 | RNAseq | 2.6489 | 0.0000 |
Upregulated datasets: 12; Downregulated datasets: 0.
Survival by ABCA13 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of ABCA13:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | ABCA13 | 154664 | 13 | 0 | 17 | |
| GSE20123 | ABCA13 | 154664 | 12 | 0 | 18 | |
| GSE43470 | ABCA13 | 154664 | 4 | 0 | 39 | |
| GSE46452 | ABCA13 | 154664 | 11 | 1 | 47 | |
| GSE47630 | ABCA13 | 154664 | 8 | 1 | 31 | |
| GSE54993 | ABCA13 | 154664 | 0 | 8 | 62 | |
| GSE54994 | ABCA13 | 154664 | 16 | 3 | 34 | |
| GSE60625 | ABCA13 | 154664 | 0 | 0 | 11 | |
| GSE74703 | ABCA13 | 154664 | 4 | 0 | 32 | |
| GSE74704 | ABCA13 | 154664 | 6 | 0 | 14 | |
| TCGA | ABCA13 | 154664 | 51 | 8 | 37 |
Total number of gains: 125; Total number of losses: 21; Total Number of normals: 342.
Somatic mutations of ABCA13:
Generating mutation plots.
Highly correlated genes for ABCA13:
Showing top 20/479 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| ABCA13 | CXCL1 | 0.725931 | 3 | 0 | 3 |
| ABCA13 | DIABLO | 0.714892 | 3 | 0 | 3 |
| ABCA13 | C11orf72 | 0.712674 | 3 | 0 | 3 |
| ABCA13 | PSMB4 | 0.71201 | 3 | 0 | 3 |
| ABCA13 | DNAJC10 | 0.701649 | 3 | 0 | 3 |
| ABCA13 | MPHOSPH6 | 0.69912 | 3 | 0 | 3 |
| ABCA13 | NCAPH | 0.699077 | 4 | 0 | 4 |
| ABCA13 | DAP | 0.685821 | 3 | 0 | 3 |
| ABCA13 | DTD2 | 0.677739 | 3 | 0 | 3 |
| ABCA13 | FOXE1 | 0.677348 | 7 | 0 | 5 |
| ABCA13 | DBF4 | 0.67706 | 3 | 0 | 3 |
| ABCA13 | HAS3 | 0.671604 | 5 | 0 | 3 |
| ABCA13 | SEL1L3 | 0.670603 | 4 | 0 | 4 |
| ABCA13 | LYZL1 | 0.670296 | 3 | 0 | 3 |
| ABCA13 | CEP19 | 0.666722 | 5 | 0 | 4 |
| ABCA13 | EME1 | 0.665878 | 4 | 0 | 4 |
| ABCA13 | RASEF | 0.6644 | 5 | 0 | 4 |
| ABCA13 | TNFRSF18 | 0.66303 | 5 | 0 | 4 |
| ABCA13 | LIN9 | 0.662959 | 4 | 0 | 3 |
| ABCA13 | CDC6 | 0.661737 | 4 | 0 | 4 |
For details and further investigation, click here
