BANF1

 

Full name: barrier to autointegration factor 1 Alias Symbol: BAF
Type: protein-coding gene Cytoband: 11q13.1
Entrez ID: 8815 HGNC ID: HGNC:17397 Ensembl Gene: ENSG00000175334 OMIM ID: 603811
Drug and gene relationship at DGIdb

 

Expression of BANF1:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 BANF1 8815 210125_s_at 0.7221 0.0962
GSE20347 BANF1 8815 210125_s_at 0.9325 0.0000
GSE23400 BANF1 8815 210125_s_at 0.8477 0.0000
GSE26886 BANF1 8815 210125_s_at 0.9743 0.0007
GSE29001 BANF1 8815 210125_s_at 0.7056 0.1990
GSE38129 BANF1 8815 210125_s_at 0.8799 0.0000
GSE45670 BANF1 8815 210125_s_at 0.5663 0.0013
GSE53622 BANF1 8815 46859 0.8011 0.0000
GSE53624 BANF1 8815 46859 1.0073 0.0000
GSE63941 BANF1 8815 210125_s_at 4.1470 0.0000
GSE77861 BANF1 8815 210125_s_at 0.7997 0.0254
GSE97050 BANF1 8815 A_23_P47208 0.5553 0.1993
SRP007169 BANF1 8815 RNAseq 0.7057 0.0140
SRP008496 BANF1 8815 RNAseq 0.5429 0.0077
SRP064894 BANF1 8815 RNAseq 0.7979 0.0052
SRP133303 BANF1 8815 RNAseq 0.8348 0.0002
SRP159526 BANF1 8815 RNAseq 0.8003 0.0035
SRP193095 BANF1 8815 RNAseq 0.4663 0.0219
SRP219564 BANF1 8815 RNAseq 0.6446 0.1475
TCGA BANF1 8815 RNAseq 0.3371 0.0000

Upregulated datasets: 2; Downregulated datasets: 0.  

 

Survival by BANF1 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of BANF1:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 BANF1 8815 8 5 17
GSE20123 BANF1 8815 8 5 17
GSE43470 BANF1 8815 6 1 36
GSE46452 BANF1 8815 11 3 45
GSE47630 BANF1 8815 7 5 28
GSE54993 BANF1 8815 3 0 67
GSE54994 BANF1 8815 8 5 40
GSE60625 BANF1 8815 0 3 8
GSE74703 BANF1 8815 4 0 32
GSE74704 BANF1 8815 6 3 11
TCGA BANF1 8815 24 6 66

Total number of gains: 85; Total number of losses: 36; Total Number of normals: 367.  

 

Somatic mutations of BANF1:

 

Generating mutation plots.

 

Highly correlated genes for BANF1:

 

Showing top 20/1934 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
BANF1MRPL380.826358404
BANF1RAB7A0.814095303
BANF1SLC39A30.785165404
BANF1FADS10.783174303
BANF1RAB340.770527303
BANF1SF3B20.75670812011
BANF1SPATA20.752712303
BANF1CSTF2T0.752385303
BANF1YIF1A0.74908210010
BANF1SORL10.738339303
BANF1TRMT1120.73799413011
BANF1NEDD10.735589606
BANF1ZNF7070.731186303
BANF1MTBP0.729945606
BANF1TET10.728396303
BANF1SAC3D10.72735610010
BANF1MRPL320.72695505
BANF1PTCD10.726575303
BANF1STIP10.72544212012
BANF1PRMT10.72309611010

For details and further investigation, click here