| Full name: calcium binding and coiled-coil domain 1 | Alias Symbol: KIAA1536|calphoglin|Cocoa | ||
| Type: protein-coding gene | Cytoband: 12q13.13 | ||
| Entrez ID: 57658 | HGNC ID: HGNC:29306 | Ensembl Gene: ENSG00000012822 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of CALCOCO1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | CALCOCO1 | 57658 | 209002_s_at | -0.7132 | 0.1984 | |
| GSE20347 | CALCOCO1 | 57658 | 209002_s_at | -0.3620 | 0.0006 | |
| GSE23400 | CALCOCO1 | 57658 | 209002_s_at | -0.3439 | 0.0000 | |
| GSE26886 | CALCOCO1 | 57658 | 209002_s_at | -0.4429 | 0.0316 | |
| GSE29001 | CALCOCO1 | 57658 | 209002_s_at | -0.3815 | 0.1705 | |
| GSE38129 | CALCOCO1 | 57658 | 209002_s_at | -0.6122 | 0.0000 | |
| GSE45670 | CALCOCO1 | 57658 | 209002_s_at | -0.1111 | 0.2383 | |
| GSE53622 | CALCOCO1 | 57658 | 136355 | -0.9205 | 0.0000 | |
| GSE53624 | CALCOCO1 | 57658 | 136355 | -0.7229 | 0.0000 | |
| GSE63941 | CALCOCO1 | 57658 | 209002_s_at | 0.3067 | 0.4772 | |
| GSE77861 | CALCOCO1 | 57658 | 209002_s_at | -0.2142 | 0.3001 | |
| GSE97050 | CALCOCO1 | 57658 | A_23_P98995 | -0.5507 | 0.2333 | |
| SRP007169 | CALCOCO1 | 57658 | RNAseq | -1.9449 | 0.0000 | |
| SRP008496 | CALCOCO1 | 57658 | RNAseq | -1.5810 | 0.0000 | |
| SRP064894 | CALCOCO1 | 57658 | RNAseq | -0.6697 | 0.0001 | |
| SRP133303 | CALCOCO1 | 57658 | RNAseq | -0.6093 | 0.0132 | |
| SRP159526 | CALCOCO1 | 57658 | RNAseq | -0.6981 | 0.0026 | |
| SRP193095 | CALCOCO1 | 57658 | RNAseq | -0.2557 | 0.1151 | |
| SRP219564 | CALCOCO1 | 57658 | RNAseq | -0.9612 | 0.0445 | |
| TCGA | CALCOCO1 | 57658 | RNAseq | -0.4030 | 0.0000 |
Upregulated datasets: 0; Downregulated datasets: 2.
Survival by CALCOCO1 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of CALCOCO1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | CALCOCO1 | 57658 | 6 | 1 | 23 | |
| GSE20123 | CALCOCO1 | 57658 | 6 | 1 | 23 | |
| GSE43470 | CALCOCO1 | 57658 | 3 | 0 | 40 | |
| GSE46452 | CALCOCO1 | 57658 | 7 | 1 | 51 | |
| GSE47630 | CALCOCO1 | 57658 | 10 | 2 | 28 | |
| GSE54993 | CALCOCO1 | 57658 | 0 | 5 | 65 | |
| GSE54994 | CALCOCO1 | 57658 | 4 | 1 | 48 | |
| GSE60625 | CALCOCO1 | 57658 | 0 | 0 | 11 | |
| GSE74703 | CALCOCO1 | 57658 | 3 | 0 | 33 | |
| GSE74704 | CALCOCO1 | 57658 | 3 | 1 | 16 | |
| TCGA | CALCOCO1 | 57658 | 15 | 11 | 70 |
Total number of gains: 57; Total number of losses: 23; Total Number of normals: 408.
Somatic mutations of CALCOCO1:
Generating mutation plots.
Highly correlated genes for CALCOCO1:
Showing top 20/439 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| CALCOCO1 | XKR4 | 0.781922 | 3 | 0 | 3 |
| CALCOCO1 | SORCS1 | 0.772718 | 3 | 0 | 3 |
| CALCOCO1 | PPP1R14A | 0.766066 | 3 | 0 | 3 |
| CALCOCO1 | TMOD1 | 0.765096 | 3 | 0 | 3 |
| CALCOCO1 | PDZRN4 | 0.74949 | 5 | 0 | 5 |
| CALCOCO1 | ZC3H6 | 0.739193 | 4 | 0 | 3 |
| CALCOCO1 | GRIK3 | 0.738763 | 3 | 0 | 3 |
| CALCOCO1 | U2AF1L4 | 0.738033 | 3 | 0 | 3 |
| CALCOCO1 | PLCD4 | 0.726385 | 4 | 0 | 4 |
| CALCOCO1 | CCDC69 | 0.724954 | 6 | 0 | 5 |
| CALCOCO1 | GKAP1 | 0.720784 | 4 | 0 | 3 |
| CALCOCO1 | UCK1 | 0.719931 | 4 | 0 | 3 |
| CALCOCO1 | MITF | 0.718305 | 4 | 0 | 4 |
| CALCOCO1 | FXYD1 | 0.704189 | 5 | 0 | 5 |
| CALCOCO1 | PGM5 | 0.703371 | 7 | 0 | 6 |
| CALCOCO1 | PYGM | 0.702551 | 7 | 0 | 6 |
| CALCOCO1 | LMO3 | 0.699383 | 4 | 0 | 4 |
| CALCOCO1 | NPPA | 0.698778 | 3 | 0 | 3 |
| CALCOCO1 | ATP1A2 | 0.693153 | 7 | 0 | 6 |
| CALCOCO1 | HAND2-AS1 | 0.692532 | 4 | 0 | 4 |
For details and further investigation, click here
