Full name: calcium binding and coiled-coil domain 2 | Alias Symbol: MGC17318|NDP52 | ||
Type: protein-coding gene | Cytoband: 17q21.32 | ||
Entrez ID: 10241 | HGNC ID: HGNC:29912 | Ensembl Gene: ENSG00000136436 | OMIM ID: 604587 |
Drug and gene relationship at DGIdb |
Expression of CALCOCO2:
Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
---|---|---|---|---|---|---|
GSE17351 | CALCOCO2 | 10241 | 210817_s_at | -0.8340 | 0.0086 | |
GSE20347 | CALCOCO2 | 10241 | 210817_s_at | -1.1608 | 0.0000 | |
GSE23400 | CALCOCO2 | 10241 | 210817_s_at | -0.4712 | 0.0000 | |
GSE26886 | CALCOCO2 | 10241 | 210817_s_at | -1.5515 | 0.0000 | |
GSE29001 | CALCOCO2 | 10241 | 210817_s_at | -0.8213 | 0.0003 | |
GSE38129 | CALCOCO2 | 10241 | 210817_s_at | -0.9936 | 0.0000 | |
GSE45670 | CALCOCO2 | 10241 | 210817_s_at | -0.6414 | 0.0001 | |
GSE53622 | CALCOCO2 | 10241 | 76116 | -0.9613 | 0.0000 | |
GSE53624 | CALCOCO2 | 10241 | 76116 | -0.7815 | 0.0000 | |
GSE63941 | CALCOCO2 | 10241 | 210817_s_at | -0.1847 | 0.6790 | |
GSE77861 | CALCOCO2 | 10241 | 210817_s_at | -0.9198 | 0.0136 | |
GSE97050 | CALCOCO2 | 10241 | A_24_P330773 | -1.0622 | 0.0555 | |
SRP007169 | CALCOCO2 | 10241 | RNAseq | -1.5949 | 0.0000 | |
SRP008496 | CALCOCO2 | 10241 | RNAseq | -1.5811 | 0.0000 | |
SRP064894 | CALCOCO2 | 10241 | RNAseq | -0.4918 | 0.0009 | |
SRP133303 | CALCOCO2 | 10241 | RNAseq | -0.6281 | 0.0013 | |
SRP159526 | CALCOCO2 | 10241 | RNAseq | -0.6161 | 0.0091 | |
SRP193095 | CALCOCO2 | 10241 | RNAseq | -0.8093 | 0.0000 | |
SRP219564 | CALCOCO2 | 10241 | RNAseq | -0.1716 | 0.4268 | |
TCGA | CALCOCO2 | 10241 | RNAseq | -0.1571 | 0.0003 |
Upregulated datasets: 0; Downregulated datasets: 4.
Survival by CALCOCO2 expression:
Note: Click image to view full size file.
Copy number change of CALCOCO2:
Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
---|---|---|---|---|---|---|
GSE15526 | CALCOCO2 | 10241 | 6 | 2 | 22 | |
GSE20123 | CALCOCO2 | 10241 | 6 | 2 | 22 | |
GSE43470 | CALCOCO2 | 10241 | 3 | 1 | 39 | |
GSE46452 | CALCOCO2 | 10241 | 32 | 0 | 27 | |
GSE47630 | CALCOCO2 | 10241 | 9 | 0 | 31 | |
GSE54993 | CALCOCO2 | 10241 | 2 | 4 | 64 | |
GSE54994 | CALCOCO2 | 10241 | 10 | 6 | 37 | |
GSE60625 | CALCOCO2 | 10241 | 4 | 0 | 7 | |
GSE74703 | CALCOCO2 | 10241 | 3 | 1 | 32 | |
GSE74704 | CALCOCO2 | 10241 | 4 | 1 | 15 | |
TCGA | CALCOCO2 | 10241 | 27 | 6 | 63 |
Total number of gains: 106; Total number of losses: 23; Total Number of normals: 359.
Somatic mutations of CALCOCO2:
Generating mutation plots.
Highly correlated genes for CALCOCO2:
Showing top 20/1967 corelated genes with mean PCC>0.5.
Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
---|---|---|---|---|---|
CALCOCO2 | EIF4E3 | 0.799312 | 8 | 0 | 8 |
CALCOCO2 | COPZ1 | 0.789058 | 3 | 0 | 3 |
CALCOCO2 | PREX2 | 0.787798 | 4 | 0 | 4 |
CALCOCO2 | SNORA68 | 0.784444 | 4 | 0 | 4 |
CALCOCO2 | RAP1A | 0.772164 | 11 | 0 | 11 |
CALCOCO2 | CLEC3B | 0.76884 | 3 | 0 | 3 |
CALCOCO2 | KAT2B | 0.765689 | 12 | 0 | 11 |
CALCOCO2 | CAB39L | 0.764693 | 11 | 0 | 11 |
CALCOCO2 | GPRASP2 | 0.763683 | 3 | 0 | 3 |
CALCOCO2 | KDM5D | 0.763336 | 3 | 0 | 3 |
CALCOCO2 | AK9 | 0.759615 | 6 | 0 | 6 |
CALCOCO2 | HPGD | 0.758598 | 11 | 0 | 11 |
CALCOCO2 | HDHD2 | 0.758493 | 5 | 0 | 5 |
CALCOCO2 | DMXL1 | 0.75598 | 12 | 0 | 11 |
CALCOCO2 | CPEB3 | 0.755383 | 10 | 0 | 10 |
CALCOCO2 | MSRA | 0.753643 | 11 | 0 | 11 |
CALCOCO2 | STX12 | 0.752216 | 11 | 0 | 11 |
CALCOCO2 | AK3 | 0.752086 | 7 | 0 | 7 |
CALCOCO2 | SECISBP2L | 0.751321 | 11 | 0 | 11 |
CALCOCO2 | PINK1 | 0.748449 | 9 | 0 | 9 |
For details and further investigation, click here