| Full name: coiled-coil domain containing 88B | Alias Symbol: FLJ37970|BRLZ|HkRP3|FLJ00354|GIPIE | ||
| Type: protein-coding gene | Cytoband: 11q13.1 | ||
| Entrez ID: 283234 | HGNC ID: HGNC:26757 | Ensembl Gene: ENSG00000168071 | OMIM ID: 611205 |
| Drug and gene relationship at DGIdb | |||
Expression of CCDC88B:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | CCDC88B | 283234 | 223663_at | 0.3114 | 0.4459 | |
| GSE26886 | CCDC88B | 283234 | 223663_at | -0.0330 | 0.8352 | |
| GSE45670 | CCDC88B | 283234 | 223663_at | 0.1644 | 0.1966 | |
| GSE53622 | CCDC88B | 283234 | 25873 | 0.1062 | 0.1465 | |
| GSE53624 | CCDC88B | 283234 | 25873 | 0.0938 | 0.2000 | |
| GSE63941 | CCDC88B | 283234 | 223663_at | 0.3536 | 0.1173 | |
| GSE77861 | CCDC88B | 283234 | 223663_at | -0.0509 | 0.7159 | |
| GSE97050 | CCDC88B | 283234 | A_23_P24384 | 0.3486 | 0.2589 | |
| SRP007169 | CCDC88B | 283234 | RNAseq | 0.7494 | 0.2924 | |
| SRP064894 | CCDC88B | 283234 | RNAseq | 0.4566 | 0.1440 | |
| SRP133303 | CCDC88B | 283234 | RNAseq | -0.4934 | 0.0313 | |
| SRP159526 | CCDC88B | 283234 | RNAseq | -0.3325 | 0.5455 | |
| SRP193095 | CCDC88B | 283234 | RNAseq | 0.4715 | 0.0466 | |
| SRP219564 | CCDC88B | 283234 | RNAseq | 0.2166 | 0.5704 | |
| TCGA | CCDC88B | 283234 | RNAseq | 0.0114 | 0.9267 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by CCDC88B expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of CCDC88B:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | CCDC88B | 283234 | 6 | 5 | 19 | |
| GSE20123 | CCDC88B | 283234 | 6 | 5 | 19 | |
| GSE43470 | CCDC88B | 283234 | 1 | 3 | 39 | |
| GSE46452 | CCDC88B | 283234 | 8 | 4 | 47 | |
| GSE47630 | CCDC88B | 283234 | 4 | 6 | 30 | |
| GSE54993 | CCDC88B | 283234 | 3 | 0 | 67 | |
| GSE54994 | CCDC88B | 283234 | 6 | 5 | 42 | |
| GSE60625 | CCDC88B | 283234 | 0 | 3 | 8 | |
| GSE74703 | CCDC88B | 283234 | 1 | 1 | 34 | |
| GSE74704 | CCDC88B | 283234 | 4 | 3 | 13 | |
| TCGA | CCDC88B | 283234 | 21 | 9 | 66 |
Total number of gains: 60; Total number of losses: 44; Total Number of normals: 384.
Somatic mutations of CCDC88B:
Generating mutation plots.
Highly correlated genes for CCDC88B:
Showing top 20/105 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| CCDC88B | ZNF488 | 0.745968 | 3 | 0 | 3 |
| CCDC88B | TBXAS1 | 0.712536 | 3 | 0 | 3 |
| CCDC88B | TUBA4B | 0.694418 | 3 | 0 | 3 |
| CCDC88B | UTS2 | 0.688794 | 3 | 0 | 3 |
| CCDC88B | KRT9 | 0.654275 | 3 | 0 | 3 |
| CCDC88B | ZDHHC18 | 0.652374 | 3 | 0 | 3 |
| CCDC88B | GSX2 | 0.636047 | 3 | 0 | 3 |
| CCDC88B | OSBP2 | 0.629801 | 6 | 0 | 4 |
| CCDC88B | CHPF | 0.628639 | 3 | 0 | 3 |
| CCDC88B | RTP3 | 0.618779 | 3 | 0 | 3 |
| CCDC88B | GFER | 0.611248 | 4 | 0 | 4 |
| CCDC88B | SSPO | 0.605104 | 3 | 0 | 3 |
| CCDC88B | CCDC61 | 0.601032 | 3 | 0 | 3 |
| CCDC88B | MAPK8IP3 | 0.595421 | 4 | 0 | 3 |
| CCDC88B | SYP | 0.590485 | 3 | 0 | 3 |
| CCDC88B | PGAM2 | 0.58959 | 3 | 0 | 3 |
| CCDC88B | GRAP | 0.589427 | 4 | 0 | 3 |
| CCDC88B | EFNB1 | 0.588912 | 4 | 0 | 4 |
| CCDC88B | AP2A1 | 0.586788 | 4 | 0 | 4 |
| CCDC88B | HK3 | 0.586483 | 4 | 0 | 3 |
For details and further investigation, click here
