| Full name: CKMT2 antisense RNA 1 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 5q14.1 | ||
| Entrez ID: 100131067 | HGNC ID: HGNC:48997 | Ensembl Gene: ENSG00000247572 | OMIM ID: |
Expression of CKMT2-AS1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | CKMT2-AS1 | 100131067 | 235443_at | -0.1668 | 0.8080 | |
| GSE26886 | CKMT2-AS1 | 100131067 | 235443_at | 1.0769 | 0.0001 | |
| GSE45670 | CKMT2-AS1 | 100131067 | 235443_at | -0.2702 | 0.0380 | |
| GSE53622 | CKMT2-AS1 | 100131067 | 49066 | -0.0008 | 0.9944 | |
| GSE53624 | CKMT2-AS1 | 100131067 | 18759 | 0.0543 | 0.4279 | |
| GSE63941 | CKMT2-AS1 | 100131067 | 235443_at | -0.0543 | 0.9216 | |
| GSE77861 | CKMT2-AS1 | 100131067 | 242585_at | -0.0791 | 0.6299 | |
| SRP007169 | CKMT2-AS1 | 100131067 | RNAseq | 0.7367 | 0.2942 | |
| SRP064894 | CKMT2-AS1 | 100131067 | RNAseq | 0.2494 | 0.0516 | |
| SRP133303 | CKMT2-AS1 | 100131067 | RNAseq | 0.1672 | 0.5061 | |
| SRP159526 | CKMT2-AS1 | 100131067 | RNAseq | 0.2402 | 0.4365 | |
| SRP193095 | CKMT2-AS1 | 100131067 | RNAseq | 0.1260 | 0.2978 | |
| SRP219564 | CKMT2-AS1 | 100131067 | RNAseq | -0.2409 | 0.6128 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by CKMT2-AS1 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of CKMT2-AS1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | CKMT2-AS1 | 100131067 | 1 | 13 | 16 | |
| GSE20123 | CKMT2-AS1 | 100131067 | 1 | 13 | 16 | |
| GSE43470 | CKMT2-AS1 | 100131067 | 2 | 11 | 30 | |
| GSE46452 | CKMT2-AS1 | 100131067 | 0 | 28 | 31 | |
| GSE47630 | CKMT2-AS1 | 100131067 | 1 | 19 | 20 | |
| GSE54993 | CKMT2-AS1 | 100131067 | 8 | 1 | 61 | |
| GSE54994 | CKMT2-AS1 | 100131067 | 2 | 18 | 33 | |
| GSE60625 | CKMT2-AS1 | 100131067 | 0 | 0 | 11 | |
| GSE74703 | CKMT2-AS1 | 100131067 | 1 | 7 | 28 | |
| GSE74704 | CKMT2-AS1 | 100131067 | 1 | 6 | 13 |
Total number of gains: 17; Total number of losses: 116; Total Number of normals: 259.
Somatic mutations of CKMT2-AS1:
Generating mutation plots.
Highly correlated genes for CKMT2-AS1:
Showing top 20/31 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| CKMT2-AS1 | SGTB | 0.70435 | 3 | 0 | 3 |
| CKMT2-AS1 | LRCH3 | 0.698997 | 3 | 0 | 3 |
| CKMT2-AS1 | NR3C1 | 0.689141 | 3 | 0 | 3 |
| CKMT2-AS1 | REV3L | 0.608358 | 3 | 0 | 3 |
| CKMT2-AS1 | BLVRA | 0.596131 | 3 | 0 | 3 |
| CKMT2-AS1 | SREK1IP1 | 0.585436 | 3 | 0 | 3 |
| CKMT2-AS1 | SEC22C | 0.583857 | 5 | 0 | 3 |
| CKMT2-AS1 | KLF10 | 0.581589 | 3 | 0 | 3 |
| CKMT2-AS1 | FSD1L | 0.580042 | 3 | 0 | 3 |
| CKMT2-AS1 | TBCA | 0.57925 | 4 | 0 | 3 |
| CKMT2-AS1 | VPS13B | 0.567956 | 3 | 0 | 3 |
| CKMT2-AS1 | TRPC1 | 0.566807 | 4 | 0 | 3 |
| CKMT2-AS1 | CWC22 | 0.565023 | 4 | 0 | 3 |
| CKMT2-AS1 | PAM | 0.562869 | 4 | 0 | 3 |
| CKMT2-AS1 | ZNF25 | 0.554629 | 4 | 0 | 4 |
| CKMT2-AS1 | CWC27 | 0.547423 | 4 | 0 | 3 |
| CKMT2-AS1 | ZNF559 | 0.546399 | 4 | 0 | 3 |
| CKMT2-AS1 | LAMB2 | 0.545719 | 4 | 0 | 3 |
| CKMT2-AS1 | FNIP1 | 0.544083 | 4 | 0 | 3 |
| CKMT2-AS1 | PMEPA1 | 0.543717 | 3 | 0 | 3 |
For details and further investigation, click here
