| Full name: collagen type XXIII alpha 1 chain | Alias Symbol: DKFZp434K0621 | ||
| Type: protein-coding gene | Cytoband: 5q35.3 | ||
| Entrez ID: 91522 | HGNC ID: HGNC:22990 | Ensembl Gene: ENSG00000050767 | OMIM ID: 610043 |
| Drug and gene relationship at DGIdb | |||
Expression of COL23A1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | COL23A1 | 91522 | 229168_at | 0.0168 | 0.9698 | |
| GSE26886 | COL23A1 | 91522 | 229168_at | 0.2991 | 0.0242 | |
| GSE45670 | COL23A1 | 91522 | 229168_at | 0.0519 | 0.6203 | |
| GSE53622 | COL23A1 | 91522 | 118134 | 0.0061 | 0.9628 | |
| GSE53624 | COL23A1 | 91522 | 118134 | 0.3387 | 0.0009 | |
| GSE63941 | COL23A1 | 91522 | 229168_at | 0.5139 | 0.1413 | |
| GSE77861 | COL23A1 | 91522 | 229168_at | -0.2039 | 0.0643 | |
| GSE97050 | COL23A1 | 91522 | A_33_P3341722 | 0.3764 | 0.1637 | |
| SRP064894 | COL23A1 | 91522 | RNAseq | 1.2246 | 0.0002 | |
| SRP133303 | COL23A1 | 91522 | RNAseq | 0.8524 | 0.1033 | |
| SRP219564 | COL23A1 | 91522 | RNAseq | 1.2472 | 0.1215 | |
| TCGA | COL23A1 | 91522 | RNAseq | -0.6486 | 0.0265 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by COL23A1 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of COL23A1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | COL23A1 | 91522 | 2 | 13 | 15 | |
| GSE20123 | COL23A1 | 91522 | 2 | 13 | 15 | |
| GSE43470 | COL23A1 | 91522 | 1 | 11 | 31 | |
| GSE46452 | COL23A1 | 91522 | 0 | 27 | 32 | |
| GSE47630 | COL23A1 | 91522 | 1 | 20 | 19 | |
| GSE54993 | COL23A1 | 91522 | 10 | 2 | 58 | |
| GSE54994 | COL23A1 | 91522 | 2 | 17 | 34 | |
| GSE60625 | COL23A1 | 91522 | 1 | 0 | 10 | |
| GSE74703 | COL23A1 | 91522 | 1 | 7 | 28 | |
| GSE74704 | COL23A1 | 91522 | 1 | 6 | 13 | |
| TCGA | COL23A1 | 91522 | 9 | 34 | 53 |
Total number of gains: 30; Total number of losses: 150; Total Number of normals: 308.
Somatic mutations of COL23A1:
Generating mutation plots.
Highly correlated genes for COL23A1:
Showing top 20/135 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| COL23A1 | IRF8 | 0.801926 | 3 | 0 | 3 |
| COL23A1 | ATG13 | 0.801558 | 3 | 0 | 3 |
| COL23A1 | BTLA | 0.745774 | 3 | 0 | 3 |
| COL23A1 | SIT1 | 0.734818 | 3 | 0 | 3 |
| COL23A1 | BEGAIN | 0.729575 | 3 | 0 | 3 |
| COL23A1 | DNAJC12 | 0.724602 | 3 | 0 | 3 |
| COL23A1 | ANGPTL6 | 0.716462 | 3 | 0 | 3 |
| COL23A1 | TNFSF8 | 0.715518 | 3 | 0 | 3 |
| COL23A1 | GNGT2 | 0.712494 | 4 | 0 | 3 |
| COL23A1 | GRIN3B | 0.700963 | 3 | 0 | 3 |
| COL23A1 | DOCK10 | 0.697379 | 3 | 0 | 3 |
| COL23A1 | RAB37 | 0.696289 | 3 | 0 | 3 |
| COL23A1 | EBF3 | 0.688511 | 3 | 0 | 3 |
| COL23A1 | TRHR | 0.688068 | 3 | 0 | 3 |
| COL23A1 | FBXO10 | 0.687673 | 3 | 0 | 3 |
| COL23A1 | SLC43A2 | 0.685878 | 3 | 0 | 3 |
| COL23A1 | ARHGEF6 | 0.681521 | 3 | 0 | 3 |
| COL23A1 | H6PD | 0.681366 | 3 | 0 | 3 |
| COL23A1 | SCML4 | 0.678514 | 3 | 0 | 3 |
| COL23A1 | COL4A4 | 0.674338 | 3 | 0 | 3 |
For details and further investigation, click here
