DPF3

 

Full name: double PHD fingers 3 Alias Symbol: cer-d4|Cerd4|FLJ14079|BAF45c
Type: protein-coding gene Cytoband: 14q24.2
Entrez ID: 8110 HGNC ID: HGNC:17427 Ensembl Gene: ENSG00000205683 OMIM ID: 601672
Drug and gene relationship at DGIdb
Screen Evidence:
  • Knocking out of this gene by CRIPR/Cas9 screen found altered tolerance on DNA toxicity in Genotoxic Screens.

 

Expression of DPF3:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 DPF3 8110 219746_at 0.0865 0.7823
GSE20347 DPF3 8110 219746_at 0.0719 0.3210
GSE23400 DPF3 8110 219746_at -0.1380 0.0026
GSE26886 DPF3 8110 219746_at 0.0028 0.9836
GSE29001 DPF3 8110 219746_at -0.1176 0.6032
GSE38129 DPF3 8110 219746_at -0.0291 0.7024
GSE45670 DPF3 8110 219746_at 0.1905 0.0779
GSE53622 DPF3 8110 7399 -0.0082 0.9463
GSE53624 DPF3 8110 46066 -0.9999 0.0000
GSE63941 DPF3 8110 219746_at 0.0945 0.5824
GSE77861 DPF3 8110 236442_at -0.2814 0.0203
GSE97050 DPF3 8110 A_33_P3240951 -0.5239 0.2233
SRP133303 DPF3 8110 RNAseq -0.9495 0.0004
SRP219564 DPF3 8110 RNAseq 1.1098 0.1767
TCGA DPF3 8110 RNAseq -1.2543 0.0014

Upregulated datasets: 0; Downregulated datasets: 1.  


 

Survival by DPF3 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  


Copy number change of DPF3:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 DPF3 8110 8 3 19
GSE20123 DPF3 8110 8 3 19
GSE43470 DPF3 8110 8 3 32
GSE46452 DPF3 8110 16 3 40
GSE47630 DPF3 8110 11 8 21
GSE54993 DPF3 8110 3 9 58
GSE54994 DPF3 8110 19 4 30
GSE60625 DPF3 8110 0 2 9
GSE74703 DPF3 8110 7 3 26
GSE74704 DPF3 8110 3 3 14
TCGA DPF3 8110 31 16 49

Total number of gains: 114; Total number of losses: 57; Total Number of normals: 317.  


 

Somatic mutations of DPF3:

 

Generating mutation plots.

 

Highly correlated genes for DPF3:

 

Showing top 20/778 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
DPF3RHAG0.772508303
DPF3NOS20.7472303
DPF3NEU30.724309404
DPF3TAS2R130.718037303
DPF3GML0.704516505
DPF3HSF50.703625303
DPF3FOLH10.70276404
DPF3HAND10.698509505
DPF3CALCB0.695896303
DPF3TCP10L0.692928505
DPF3CCDC300.688552707
DPF3MUC5AC0.687045404
DPF3CHGA0.686007303
DPF3HRG0.684826404
DPF3ART10.6808505
DPF3PDE2A0.680791303
DPF3SLC17A30.679674504
DPF3NAA110.676779404
DPF3GPD10.676703504
DPF3SEMA4G0.674728505

For details and further investigation, click here