GAN

 

Full name: gigaxonin Alias Symbol: GAN1|KLHL16
Type: protein-coding gene Cytoband: 16q23.2
Entrez ID: 8139 HGNC ID: HGNC:4137 Ensembl Gene: ENSG00000261609 OMIM ID: 605379
Drug and gene relationship at DGIdb

 

Expression of GAN:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 GAN 8139 228567_at 0.1849 0.6469
GSE20347 GAN 8139 220124_at -0.3668 0.0133
GSE23400 GAN 8139 220124_at -0.0515 0.1149
GSE26886 GAN 8139 228567_at -0.8157 0.0015
GSE29001 GAN 8139 220124_at -0.2931 0.4517
GSE38129 GAN 8139 220124_at -0.0482 0.8313
GSE45670 GAN 8139 228567_at -0.1303 0.5907
GSE53622 GAN 8139 138116 -0.6034 0.0000
GSE53624 GAN 8139 138116 -0.5477 0.0000
GSE63941 GAN 8139 228567_at 0.3926 0.3847
GSE77861 GAN 8139 228567_at -0.1682 0.6971
GSE97050 GAN 8139 A_23_P88873 -0.0310 0.9238
SRP007169 GAN 8139 RNAseq -0.2439 0.6681
SRP008496 GAN 8139 RNAseq -0.1472 0.6749
SRP064894 GAN 8139 RNAseq -1.2335 0.0018
SRP133303 GAN 8139 RNAseq -0.5463 0.0005
SRP159526 GAN 8139 RNAseq -0.0432 0.9367
SRP193095 GAN 8139 RNAseq -0.7881 0.0000
SRP219564 GAN 8139 RNAseq -1.0558 0.0822
TCGA GAN 8139 RNAseq 0.0295 0.8020

Upregulated datasets: 0; Downregulated datasets: 1.  


 

Survival by GAN expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  


Copy number change of GAN:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 GAN 8139 5 3 22
GSE20123 GAN 8139 5 3 22
GSE43470 GAN 8139 2 8 33
GSE46452 GAN 8139 37 2 20
GSE47630 GAN 8139 11 9 20
GSE54993 GAN 8139 2 4 64
GSE54994 GAN 8139 7 10 36
GSE60625 GAN 8139 4 0 7
GSE74703 GAN 8139 2 6 28
GSE74704 GAN 8139 3 2 15
TCGA GAN 8139 25 16 55

Total number of gains: 103; Total number of losses: 63; Total Number of normals: 322.  


 

Somatic mutations of GAN:

 

Generating mutation plots.

 

Highly correlated genes for GAN:

 

Showing top 20/704 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
GANCPEB40.703905303
GANPITHD10.685664404
GANOSBPL80.684142303
GANELOVL10.683756303
GANCAPNS20.668855404
GANRAB8A0.66422303
GANNPC10.660019303
GANSTXBP50.65895504
GANCTTNBP2NL0.654402404
GANMETRNL0.653765404
GANSLC22A150.653311303
GANPSMD50.652034404
GANTAX1BP30.645157303
GANGRPEL20.639921403
GANNIP70.632761505
GANJAG10.631733403
GANHK10.628941808
GANPPP2R2C0.628282404
GANGSDMC0.626959504
GANABLIM20.623926404

For details and further investigation, click here