| Full name: glucosaminyl (N-acetyl) transferase 4 | Alias Symbol: C2GNT3 | ||
| Type: protein-coding gene | Cytoband: 5q13.3 | ||
| Entrez ID: 51301 | HGNC ID: HGNC:17973 | Ensembl Gene: ENSG00000176928 | OMIM ID: 616782 |
| Drug and gene relationship at DGIdb | |||
Expression of GCNT4:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | GCNT4 | 51301 | 220831_at | -0.1448 | 0.5138 | |
| GSE20347 | GCNT4 | 51301 | 220831_at | 0.0843 | 0.1012 | |
| GSE23400 | GCNT4 | 51301 | 220831_at | -0.0781 | 0.0175 | |
| GSE26886 | GCNT4 | 51301 | 220831_at | -0.0531 | 0.6875 | |
| GSE29001 | GCNT4 | 51301 | 220831_at | 0.0198 | 0.9328 | |
| GSE38129 | GCNT4 | 51301 | 220831_at | 0.0163 | 0.8601 | |
| GSE45670 | GCNT4 | 51301 | 220831_at | 0.0648 | 0.2724 | |
| GSE53622 | GCNT4 | 51301 | 69100 | -1.2221 | 0.0000 | |
| GSE53624 | GCNT4 | 51301 | 69100 | -0.4843 | 0.0000 | |
| GSE63941 | GCNT4 | 51301 | 220831_at | 0.1229 | 0.3703 | |
| GSE77861 | GCNT4 | 51301 | 220831_at | -0.1206 | 0.1727 | |
| GSE97050 | GCNT4 | 51301 | A_23_P122077 | -0.3271 | 0.3749 | |
| SRP007169 | GCNT4 | 51301 | RNAseq | -1.0066 | 0.0963 | |
| SRP064894 | GCNT4 | 51301 | RNAseq | -0.8895 | 0.0007 | |
| SRP133303 | GCNT4 | 51301 | RNAseq | -0.7529 | 0.0101 | |
| SRP159526 | GCNT4 | 51301 | RNAseq | -1.1534 | 0.0043 | |
| SRP193095 | GCNT4 | 51301 | RNAseq | -2.0077 | 0.0000 | |
| SRP219564 | GCNT4 | 51301 | RNAseq | -1.4347 | 0.0025 | |
| TCGA | GCNT4 | 51301 | RNAseq | -1.1227 | 0.0000 |
Upregulated datasets: 0; Downregulated datasets: 5.
Survival by GCNT4 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of GCNT4:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | GCNT4 | 51301 | 1 | 13 | 16 | |
| GSE20123 | GCNT4 | 51301 | 1 | 13 | 16 | |
| GSE43470 | GCNT4 | 51301 | 1 | 13 | 29 | |
| GSE46452 | GCNT4 | 51301 | 0 | 28 | 31 | |
| GSE47630 | GCNT4 | 51301 | 1 | 19 | 20 | |
| GSE54993 | GCNT4 | 51301 | 8 | 1 | 61 | |
| GSE54994 | GCNT4 | 51301 | 1 | 19 | 33 | |
| GSE60625 | GCNT4 | 51301 | 0 | 0 | 11 | |
| GSE74703 | GCNT4 | 51301 | 1 | 9 | 26 | |
| GSE74704 | GCNT4 | 51301 | 1 | 6 | 13 | |
| TCGA | GCNT4 | 51301 | 4 | 50 | 42 |
Total number of gains: 19; Total number of losses: 171; Total Number of normals: 298.
Somatic mutations of GCNT4:
Generating mutation plots.
Highly correlated genes for GCNT4:
Showing top 20/571 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| GCNT4 | PDK4 | 0.763339 | 4 | 0 | 4 |
| GCNT4 | APAF1 | 0.704495 | 4 | 0 | 4 |
| GCNT4 | KRT38 | 0.703738 | 3 | 0 | 3 |
| GCNT4 | SLC6A5 | 0.700501 | 4 | 0 | 4 |
| GCNT4 | LRRC75B | 0.696426 | 3 | 0 | 3 |
| GCNT4 | TAS2R16 | 0.679577 | 3 | 0 | 3 |
| GCNT4 | COL4A3 | 0.669021 | 5 | 0 | 4 |
| GCNT4 | IAPP | 0.666634 | 3 | 0 | 3 |
| GCNT4 | NR5A1 | 0.66573 | 3 | 0 | 3 |
| GCNT4 | TAS2R7 | 0.656491 | 3 | 0 | 3 |
| GCNT4 | TRPV5 | 0.654273 | 3 | 0 | 3 |
| GCNT4 | ATN1 | 0.654195 | 5 | 0 | 4 |
| GCNT4 | KLHDC8B | 0.649178 | 3 | 0 | 3 |
| GCNT4 | PNPLA7 | 0.64701 | 4 | 0 | 4 |
| GCNT4 | ATP1A3 | 0.645123 | 3 | 0 | 3 |
| GCNT4 | DNASE1L2 | 0.643785 | 3 | 0 | 3 |
| GCNT4 | GRIK3 | 0.643492 | 5 | 0 | 4 |
| GCNT4 | CGA | 0.642995 | 5 | 0 | 5 |
| GCNT4 | OR2B2 | 0.642988 | 3 | 0 | 3 |
| GCNT4 | DYM | 0.64224 | 3 | 0 | 3 |
For details and further investigation, click here
