| Full name: G-patch domain containing 3 | Alias Symbol: FLJ12455 | ||
| Type: protein-coding gene | Cytoband: 1p36.11 | ||
| Entrez ID: 63906 | HGNC ID: HGNC:25720 | Ensembl Gene: ENSG00000198746 | OMIM ID: 617486 |
| Drug and gene relationship at DGIdb | |||
Expression of GPATCH3:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | GPATCH3 | 63906 | 218895_at | 0.2303 | 0.3862 | |
| GSE20347 | GPATCH3 | 63906 | 218895_at | 0.1031 | 0.3262 | |
| GSE23400 | GPATCH3 | 63906 | 218895_at | -0.0321 | 0.4982 | |
| GSE26886 | GPATCH3 | 63906 | 218895_at | -0.3543 | 0.0065 | |
| GSE29001 | GPATCH3 | 63906 | 218895_at | -0.0842 | 0.5553 | |
| GSE38129 | GPATCH3 | 63906 | 218895_at | 0.0950 | 0.1981 | |
| GSE45670 | GPATCH3 | 63906 | 218895_at | 0.0950 | 0.3650 | |
| GSE53622 | GPATCH3 | 63906 | 74714 | -0.2288 | 0.0001 | |
| GSE53624 | GPATCH3 | 63906 | 74714 | -0.3307 | 0.0000 | |
| GSE63941 | GPATCH3 | 63906 | 218895_at | 0.1337 | 0.5463 | |
| GSE77861 | GPATCH3 | 63906 | 218895_at | -0.0251 | 0.8466 | |
| GSE97050 | GPATCH3 | 63906 | A_33_P3217147 | -1.1390 | 0.1832 | |
| SRP007169 | GPATCH3 | 63906 | RNAseq | 0.0634 | 0.9067 | |
| SRP064894 | GPATCH3 | 63906 | RNAseq | 0.4304 | 0.0647 | |
| SRP133303 | GPATCH3 | 63906 | RNAseq | 0.2794 | 0.1834 | |
| SRP159526 | GPATCH3 | 63906 | RNAseq | 0.0017 | 0.9956 | |
| SRP193095 | GPATCH3 | 63906 | RNAseq | 0.0600 | 0.5897 | |
| SRP219564 | GPATCH3 | 63906 | RNAseq | 0.3412 | 0.2334 | |
| TCGA | GPATCH3 | 63906 | RNAseq | 0.0199 | 0.7634 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by GPATCH3 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of GPATCH3:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | GPATCH3 | 63906 | 0 | 6 | 24 | |
| GSE20123 | GPATCH3 | 63906 | 0 | 5 | 25 | |
| GSE43470 | GPATCH3 | 63906 | 2 | 6 | 35 | |
| GSE46452 | GPATCH3 | 63906 | 5 | 1 | 53 | |
| GSE47630 | GPATCH3 | 63906 | 8 | 3 | 29 | |
| GSE54993 | GPATCH3 | 63906 | 2 | 1 | 67 | |
| GSE54994 | GPATCH3 | 63906 | 10 | 4 | 39 | |
| GSE60625 | GPATCH3 | 63906 | 0 | 0 | 11 | |
| GSE74703 | GPATCH3 | 63906 | 1 | 4 | 31 | |
| GSE74704 | GPATCH3 | 63906 | 0 | 0 | 20 | |
| TCGA | GPATCH3 | 63906 | 10 | 24 | 62 |
Total number of gains: 38; Total number of losses: 54; Total Number of normals: 396.
Somatic mutations of GPATCH3:
Generating mutation plots.
Highly correlated genes for GPATCH3:
Showing top 20/174 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| GPATCH3 | NOTO | 0.793482 | 3 | 0 | 3 |
| GPATCH3 | BARHL2 | 0.740271 | 3 | 0 | 3 |
| GPATCH3 | CLEC18C | 0.738791 | 3 | 0 | 3 |
| GPATCH3 | RNF222 | 0.717995 | 3 | 0 | 3 |
| GPATCH3 | GPHB5 | 0.717438 | 3 | 0 | 3 |
| GPATCH3 | PRDM13 | 0.701183 | 3 | 0 | 3 |
| GPATCH3 | PATE3 | 0.700499 | 3 | 0 | 3 |
| GPATCH3 | COL20A1 | 0.698492 | 3 | 0 | 3 |
| GPATCH3 | ACTL8 | 0.693906 | 4 | 0 | 3 |
| GPATCH3 | OPN4 | 0.683355 | 3 | 0 | 3 |
| GPATCH3 | BTBD9 | 0.681971 | 4 | 0 | 3 |
| GPATCH3 | USHBP1 | 0.680757 | 3 | 0 | 3 |
| GPATCH3 | KRTAP5-5 | 0.680463 | 3 | 0 | 3 |
| GPATCH3 | CCDC61 | 0.67756 | 3 | 0 | 3 |
| GPATCH3 | RASGEF1A | 0.675612 | 3 | 0 | 3 |
| GPATCH3 | ATP2B3 | 0.672387 | 4 | 0 | 3 |
| GPATCH3 | IPO13 | 0.669336 | 5 | 0 | 5 |
| GPATCH3 | GALNT9 | 0.667705 | 3 | 0 | 3 |
| GPATCH3 | ACER1 | 0.664506 | 4 | 0 | 4 |
| GPATCH3 | AIFM3 | 0.65885 | 3 | 0 | 3 |
For details and further investigation, click here
