LINC00330

 

Full name: long intergenic non-protein coding RNA 330 Alias Symbol: 
Type: non-coding RNA Cytoband: 13q14.12
Entrez ID: 144817 HGNC ID: HGNC:42047 Ensembl Gene: ENSG00000235097 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LINC00330:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LINC00330 144817 1564263_at -1.1674 0.0698
GSE26886 LINC00330 144817 1564263_at -0.7955 0.0004
GSE45670 LINC00330 144817 1564263_at -0.6290 0.0076
GSE53622 LINC00330 144817 88726 -1.6206 0.0000
GSE53624 LINC00330 144817 88726 -2.0980 0.0000
GSE63941 LINC00330 144817 1564263_at 0.0269 0.8974
GSE77861 LINC00330 144817 1564263_at -0.3455 0.0432
SRP007169 LINC00330 144817 RNAseq -3.4617 0.0000
SRP064894 LINC00330 144817 RNAseq -3.4898 0.0000
SRP133303 LINC00330 144817 RNAseq -1.1140 0.0000
SRP159526 LINC00330 144817 RNAseq -5.0305 0.0000
SRP193095 LINC00330 144817 RNAseq -1.4756 0.0000

Upregulated datasets: 0; Downregulated datasets: 7.  

 

Survival by LINC00330 expression:

 

GSE53622GSE53624

 

Note: Click image to view full size file.  

Copy number change of LINC00330:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LINC00330 144817 0 13 17
GSE20123 LINC00330 144817 0 12 18
GSE43470 LINC00330 144817 3 13 27
GSE46452 LINC00330 144817 0 33 26
GSE47630 LINC00330 144817 2 27 11
GSE54993 LINC00330 144817 12 2 56
GSE54994 LINC00330 144817 1 16 36
GSE60625 LINC00330 144817 0 3 8
GSE74703 LINC00330 144817 3 10 23
GSE74704 LINC00330 144817 0 9 11
TCGA LINC00330 144817 8 39 49

Total number of gains: 29; Total number of losses: 177; Total Number of normals: 282.  

 

Somatic mutations of LINC00330:

 

Generating mutation plots.

 

Highly correlated genes for LINC00330:

 

Showing top 20/1310 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LINC00330GDPD30.815703606
LINC00330IL36A0.81243606
LINC00330FAM3D0.810164606
LINC00330SLC7A40.809464303
LINC00330NAGK0.805259606
LINC00330TRIP100.797201606
LINC00330CAPN50.796218606
LINC00330RAET1E0.793553606
LINC00330KRT780.79292606
LINC00330PRSS270.783842606
LINC00330ECM10.782791606
LINC00330SPNS20.782183404
LINC00330SCNN1B0.782157606
LINC00330ANXA90.782058606
LINC00330A2ML10.781945606
LINC00330FLG-AS10.781004606
LINC00330SMIM50.780733606
LINC00330EPS8L10.780142606
LINC00330SLURP10.778091606
LINC00330CYSRT10.777919606

For details and further investigation, click here