| Full name: long intergenic non-protein coding RNA 472 | Alias Symbol: dJ288M22.3|FLJ13189|P53RRA | ||
| Type: non-coding RNA | Cytoband: 6q13 | ||
| Entrez ID: 79940 | HGNC ID: HGNC:21380 | Ensembl Gene: ENSG00000233237 | OMIM ID: |
Expression of LINC00472:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00472 | 79940 | 235771_at | -0.7574 | 0.1518 | |
| GSE20347 | LINC00472 | 79940 | 220324_at | 0.0784 | 0.2219 | |
| GSE23400 | LINC00472 | 79940 | 220324_at | -0.0251 | 0.3398 | |
| GSE26886 | LINC00472 | 79940 | 220324_at | 0.2183 | 0.0434 | |
| GSE29001 | LINC00472 | 79940 | 220324_at | 0.2693 | 0.4787 | |
| GSE38129 | LINC00472 | 79940 | 220324_at | -0.0640 | 0.4416 | |
| GSE45670 | LINC00472 | 79940 | 235771_at | -1.0239 | 0.0000 | |
| GSE53622 | LINC00472 | 79940 | 41453 | -0.5631 | 0.0018 | |
| GSE53624 | LINC00472 | 79940 | 41453 | -0.5792 | 0.0000 | |
| GSE63941 | LINC00472 | 79940 | 235771_at | -1.2624 | 0.0411 | |
| GSE77861 | LINC00472 | 79940 | 220324_at | -0.0919 | 0.3077 | |
| SRP064894 | LINC00472 | 79940 | RNAseq | -0.7813 | 0.0232 | |
| SRP133303 | LINC00472 | 79940 | RNAseq | -0.6154 | 0.0328 | |
| SRP159526 | LINC00472 | 79940 | RNAseq | -0.1599 | 0.7879 | |
| SRP193095 | LINC00472 | 79940 | RNAseq | 0.8058 | 0.0023 | |
| SRP219564 | LINC00472 | 79940 | RNAseq | -0.3968 | 0.5979 |
Upregulated datasets: 0; Downregulated datasets: 2.
Survival by LINC00472 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00472:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00472 | 79940 | 2 | 2 | 26 | |
| GSE20123 | LINC00472 | 79940 | 2 | 1 | 27 | |
| GSE43470 | LINC00472 | 79940 | 3 | 0 | 40 | |
| GSE46452 | LINC00472 | 79940 | 2 | 11 | 46 | |
| GSE47630 | LINC00472 | 79940 | 8 | 4 | 28 | |
| GSE54993 | LINC00472 | 79940 | 3 | 2 | 65 | |
| GSE54994 | LINC00472 | 79940 | 9 | 5 | 39 | |
| GSE60625 | LINC00472 | 79940 | 0 | 1 | 10 | |
| GSE74703 | LINC00472 | 79940 | 3 | 0 | 33 | |
| GSE74704 | LINC00472 | 79940 | 0 | 1 | 19 | |
| TCGA | LINC00472 | 79940 | 10 | 20 | 66 |
Total number of gains: 42; Total number of losses: 47; Total Number of normals: 399.
Somatic mutations of LINC00472:
Generating mutation plots.
Highly correlated genes for LINC00472:
Showing top 20/340 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00472 | CNTN3 | 0.738336 | 3 | 0 | 3 |
| LINC00472 | PPP1R1A | 0.735312 | 4 | 0 | 4 |
| LINC00472 | FXYD1 | 0.72682 | 3 | 0 | 3 |
| LINC00472 | SLC25A4 | 0.718844 | 4 | 0 | 4 |
| LINC00472 | MEOX2 | 0.695902 | 3 | 0 | 3 |
| LINC00472 | GADL1 | 0.69496 | 4 | 0 | 3 |
| LINC00472 | CASQ2 | 0.691527 | 4 | 0 | 3 |
| LINC00472 | C1QTNF7 | 0.690141 | 4 | 0 | 4 |
| LINC00472 | LMO3 | 0.683563 | 4 | 0 | 3 |
| LINC00472 | PLP1 | 0.683354 | 5 | 0 | 4 |
| LINC00472 | STARD13 | 0.683311 | 5 | 0 | 5 |
| LINC00472 | SHISA3 | 0.68222 | 4 | 0 | 4 |
| LINC00472 | PPARGC1A | 0.682159 | 5 | 0 | 4 |
| LINC00472 | IL11RA | 0.681507 | 3 | 0 | 3 |
| LINC00472 | RNF150 | 0.678983 | 4 | 0 | 3 |
| LINC00472 | ADAMTSL1 | 0.678261 | 4 | 0 | 3 |
| LINC00472 | ILK | 0.671329 | 4 | 0 | 3 |
| LINC00472 | BRINP3 | 0.67048 | 5 | 0 | 5 |
| LINC00472 | ARHGEF25 | 0.67029 | 3 | 0 | 3 |
| LINC00472 | CACNB2 | 0.668721 | 5 | 0 | 4 |
For details and further investigation, click here
