| Full name: long intergenic non-protein coding RNA 563 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 13q14.13 | ||
| Entrez ID: 100861554 | HGNC ID: HGNC:43707 | Ensembl Gene: ENSG00000261097 | OMIM ID: |
Expression of LINC00563:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00563 | 100861554 | 215738_at | -0.0454 | 0.8784 | |
| GSE20347 | LINC00563 | 100861554 | 215738_at | -0.0480 | 0.6069 | |
| GSE23400 | LINC00563 | 100861554 | 215738_at | -0.1522 | 0.0005 | |
| GSE26886 | LINC00563 | 100861554 | 215738_at | -0.1917 | 0.0618 | |
| GSE29001 | LINC00563 | 100861554 | 215738_at | -0.2664 | 0.0700 | |
| GSE38129 | LINC00563 | 100861554 | 215738_at | -0.0729 | 0.3300 | |
| GSE45670 | LINC00563 | 100861554 | 215738_at | 0.0744 | 0.4584 | |
| GSE53622 | LINC00563 | 100861554 | 144848 | 0.0241 | 0.8720 | |
| GSE53624 | LINC00563 | 100861554 | 144848 | 0.2686 | 0.0003 | |
| GSE63941 | LINC00563 | 100861554 | 215738_at | -0.1146 | 0.6675 | |
| GSE77861 | LINC00563 | 100861554 | 215738_at | -0.2663 | 0.0124 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00563 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00563:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00563 | 100861554 | 0 | 14 | 16 | |
| GSE20123 | LINC00563 | 100861554 | 0 | 13 | 17 | |
| GSE43470 | LINC00563 | 100861554 | 3 | 13 | 27 | |
| GSE46452 | LINC00563 | 100861554 | 0 | 33 | 26 | |
| GSE47630 | LINC00563 | 100861554 | 2 | 27 | 11 | |
| GSE54993 | LINC00563 | 100861554 | 12 | 2 | 56 | |
| GSE54994 | LINC00563 | 100861554 | 1 | 16 | 36 | |
| GSE60625 | LINC00563 | 100861554 | 0 | 3 | 8 | |
| GSE74703 | LINC00563 | 100861554 | 3 | 10 | 23 | |
| GSE74704 | LINC00563 | 100861554 | 0 | 10 | 10 | |
| TCGA | LINC00563 | 100861554 | 9 | 38 | 49 |
Total number of gains: 30; Total number of losses: 179; Total Number of normals: 279.
Somatic mutations of LINC00563:
Generating mutation plots.
Highly correlated genes for LINC00563:
Showing top 20/658 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00563 | CHRM2 | 0.737812 | 4 | 0 | 4 |
| LINC00563 | PAPPA2 | 0.709241 | 5 | 0 | 5 |
| LINC00563 | IL17A | 0.707449 | 5 | 0 | 5 |
| LINC00563 | KRT76 | 0.70193 | 5 | 0 | 5 |
| LINC00563 | SLC22A13 | 0.701131 | 4 | 0 | 4 |
| LINC00563 | KCNJ10 | 0.700538 | 4 | 0 | 4 |
| LINC00563 | MEPE | 0.697346 | 5 | 0 | 5 |
| LINC00563 | RPS6KA6 | 0.695087 | 4 | 0 | 4 |
| LINC00563 | KIR2DS2 | 0.693607 | 5 | 0 | 5 |
| LINC00563 | PHLDB1 | 0.693545 | 6 | 0 | 6 |
| LINC00563 | FAM13C | 0.693303 | 3 | 0 | 3 |
| LINC00563 | KCNB2 | 0.690262 | 4 | 0 | 4 |
| LINC00563 | MYT1 | 0.689168 | 5 | 0 | 5 |
| LINC00563 | ADAM22 | 0.684237 | 4 | 0 | 4 |
| LINC00563 | NXPE4 | 0.683614 | 4 | 0 | 4 |
| LINC00563 | KCNA1 | 0.683178 | 4 | 0 | 4 |
| LINC00563 | USP2 | 0.68141 | 4 | 0 | 3 |
| LINC00563 | IL18BP | 0.68134 | 4 | 0 | 4 |
| LINC00563 | HRC | 0.678628 | 3 | 0 | 3 |
| LINC00563 | AKAP6 | 0.675999 | 4 | 0 | 4 |
For details and further investigation, click here
