| Full name: long intergenic non-protein coding RNA 1004 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 7q22.3 | ||
| Entrez ID: 100216546 | HGNC ID: HGNC:48961 | Ensembl Gene: ENSG00000228393 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC01004:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC01004 | 100216546 | 235217_at | 1.0097 | 0.2077 | |
| GSE26886 | LINC01004 | 100216546 | 235217_at | 1.1635 | 0.0023 | |
| GSE45670 | LINC01004 | 100216546 | 235217_at | 0.3215 | 0.1052 | |
| GSE63941 | LINC01004 | 100216546 | 235217_at | -1.0088 | 0.1255 | |
| GSE77861 | LINC01004 | 100216546 | 235217_at | 0.1254 | 0.4351 | |
| SRP007169 | LINC01004 | 100216546 | RNAseq | 0.6339 | 0.2264 | |
| SRP008496 | LINC01004 | 100216546 | RNAseq | 0.8314 | 0.0523 | |
| SRP064894 | LINC01004 | 100216546 | RNAseq | 0.1113 | 0.6977 | |
| SRP133303 | LINC01004 | 100216546 | RNAseq | 0.0821 | 0.6794 | |
| SRP159526 | LINC01004 | 100216546 | RNAseq | -0.0069 | 0.9801 | |
| SRP193095 | LINC01004 | 100216546 | RNAseq | 0.0269 | 0.8707 | |
| SRP219564 | LINC01004 | 100216546 | RNAseq | -0.1836 | 0.6144 |
Upregulated datasets: 1; Downregulated datasets: 0.
Copy number change of LINC01004:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC01004 | 100216546 | 13 | 0 | 17 | |
| GSE20123 | LINC01004 | 100216546 | 13 | 0 | 17 | |
| GSE43470 | LINC01004 | 100216546 | 7 | 1 | 35 | |
| GSE46452 | LINC01004 | 100216546 | 10 | 1 | 48 | |
| GSE47630 | LINC01004 | 100216546 | 7 | 3 | 30 | |
| GSE54993 | LINC01004 | 100216546 | 2 | 10 | 58 | |
| GSE54994 | LINC01004 | 100216546 | 15 | 3 | 35 | |
| GSE60625 | LINC01004 | 100216546 | 0 | 0 | 11 | |
| GSE74703 | LINC01004 | 100216546 | 7 | 1 | 28 | |
| GSE74704 | LINC01004 | 100216546 | 8 | 0 | 12 |
Total number of gains: 82; Total number of losses: 19; Total Number of normals: 291.
Somatic mutations of LINC01004:
Generating mutation plots.
Highly correlated genes for LINC01004:
Showing top 20/66 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC01004 | EXOSC2 | 0.683316 | 3 | 0 | 3 |
| LINC01004 | ZNF518B | 0.670972 | 3 | 0 | 3 |
| LINC01004 | ANAPC10 | 0.669034 | 3 | 0 | 3 |
| LINC01004 | GNGT1 | 0.661613 | 3 | 0 | 3 |
| LINC01004 | PRPF40A | 0.654412 | 3 | 0 | 3 |
| LINC01004 | DNAJC2 | 0.648472 | 3 | 0 | 3 |
| LINC01004 | DDX55 | 0.646772 | 3 | 0 | 3 |
| LINC01004 | FANCL | 0.633337 | 4 | 0 | 4 |
| LINC01004 | CST1 | 0.630233 | 3 | 0 | 3 |
| LINC01004 | ATP1B3 | 0.624142 | 3 | 0 | 3 |
| LINC01004 | ZNF146 | 0.623292 | 3 | 0 | 3 |
| LINC01004 | LINC00467 | 0.623257 | 3 | 0 | 3 |
| LINC01004 | NELFB | 0.621098 | 3 | 0 | 3 |
| LINC01004 | XCL1 | 0.617849 | 4 | 0 | 3 |
| LINC01004 | PAICS | 0.616624 | 3 | 0 | 3 |
| LINC01004 | ATR | 0.61533 | 3 | 0 | 3 |
| LINC01004 | HIVEP2 | 0.612821 | 3 | 0 | 3 |
| LINC01004 | CCS | 0.609235 | 3 | 0 | 3 |
| LINC01004 | BRIX1 | 0.608486 | 3 | 0 | 3 |
| LINC01004 | CCDC142 | 0.607567 | 3 | 0 | 3 |
For details and further investigation, click here
