| Full name: long intergenic non-protein coding RNA 1089 | Alias Symbol: LIMT|AK096174 | ||
| Type: non-coding RNA | Cytoband: 12q24.31 | ||
| Entrez ID: 338799 | HGNC ID: HGNC:27886 | Ensembl Gene: ENSG00000212694 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC01089:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC01089 | 338799 | 1556042_s_at | 0.2096 | 0.7570 | |
| GSE26886 | LINC01089 | 338799 | 1556042_s_at | 0.0792 | 0.5498 | |
| GSE45670 | LINC01089 | 338799 | 1556042_s_at | -0.0608 | 0.5439 | |
| GSE53622 | LINC01089 | 338799 | 75714 | 0.6277 | 0.0000 | |
| GSE53624 | LINC01089 | 338799 | 139923 | 0.1639 | 0.0837 | |
| GSE63941 | LINC01089 | 338799 | 1556042_s_at | 0.7141 | 0.0085 | |
| GSE77861 | LINC01089 | 338799 | 1556042_s_at | 0.0357 | 0.7453 | |
| SRP007169 | LINC01089 | 338799 | RNAseq | -0.1756 | 0.7584 | |
| SRP008496 | LINC01089 | 338799 | RNAseq | 0.9980 | 0.0372 | |
| SRP064894 | LINC01089 | 338799 | RNAseq | -0.0238 | 0.9365 | |
| SRP133303 | LINC01089 | 338799 | RNAseq | -0.3002 | 0.1551 | |
| SRP159526 | LINC01089 | 338799 | RNAseq | 0.4899 | 0.1565 | |
| SRP193095 | LINC01089 | 338799 | RNAseq | 0.1798 | 0.1528 | |
| SRP219564 | LINC01089 | 338799 | RNAseq | -0.2913 | 0.5537 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC01089 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC01089:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC01089 | 338799 | 5 | 4 | 21 | |
| GSE20123 | LINC01089 | 338799 | 5 | 4 | 21 | |
| GSE43470 | LINC01089 | 338799 | 2 | 2 | 39 | |
| GSE46452 | LINC01089 | 338799 | 9 | 1 | 49 | |
| GSE47630 | LINC01089 | 338799 | 9 | 3 | 28 | |
| GSE54993 | LINC01089 | 338799 | 0 | 5 | 65 | |
| GSE54994 | LINC01089 | 338799 | 6 | 7 | 40 | |
| GSE60625 | LINC01089 | 338799 | 0 | 0 | 11 | |
| GSE74703 | LINC01089 | 338799 | 2 | 1 | 33 | |
| GSE74704 | LINC01089 | 338799 | 4 | 2 | 14 |
Total number of gains: 42; Total number of losses: 29; Total Number of normals: 321.
Somatic mutations of LINC01089:
Generating mutation plots.
Highly correlated genes for LINC01089:
Showing top 20/37 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC01089 | TSEN54 | 0.667527 | 3 | 0 | 3 |
| LINC01089 | TLDC2 | 0.654789 | 3 | 0 | 3 |
| LINC01089 | ZNF689 | 0.637326 | 3 | 0 | 3 |
| LINC01089 | PARN | 0.636123 | 3 | 0 | 3 |
| LINC01089 | CDK4 | 0.633722 | 3 | 0 | 3 |
| LINC01089 | ZNF385A | 0.621771 | 3 | 0 | 3 |
| LINC01089 | SLC41A3 | 0.620351 | 4 | 0 | 3 |
| LINC01089 | TIGD3 | 0.608477 | 3 | 0 | 3 |
| LINC01089 | UNC5B-AS1 | 0.606207 | 3 | 0 | 3 |
| LINC01089 | SOX13 | 0.60499 | 4 | 0 | 3 |
| LINC01089 | SIX1 | 0.603379 | 3 | 0 | 3 |
| LINC01089 | C10orf53 | 0.591568 | 3 | 0 | 3 |
| LINC01089 | VAC14 | 0.584766 | 3 | 0 | 3 |
| LINC01089 | MPV17L | 0.582966 | 3 | 0 | 3 |
| LINC01089 | PPP5C | 0.567955 | 4 | 0 | 3 |
| LINC01089 | MCM2 | 0.567882 | 3 | 0 | 3 |
| LINC01089 | HOXD11 | 0.566265 | 3 | 0 | 3 |
| LINC01089 | LRFN4 | 0.561541 | 5 | 0 | 3 |
| LINC01089 | SBK1 | 0.552049 | 4 | 0 | 3 |
| LINC01089 | CBX8 | 0.551529 | 4 | 0 | 3 |
For details and further investigation, click here
