| Full name: leucine rich repeat transmembrane neuronal 1 | Alias Symbol: FLJ32082 | ||
| Type: protein-coding gene | Cytoband: 2p12 | ||
| Entrez ID: 347730 | HGNC ID: HGNC:19408 | Ensembl Gene: ENSG00000162951 | OMIM ID: 610867 |
| Drug and gene relationship at DGIdb | |||
Expression of LRRTM1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LRRTM1 | 347730 | 238815_at | -0.1368 | 0.7976 | |
| GSE26886 | LRRTM1 | 347730 | 238815_at | 0.1118 | 0.3514 | |
| GSE45670 | LRRTM1 | 347730 | 238815_at | 0.0626 | 0.5299 | |
| GSE53622 | LRRTM1 | 347730 | 146412 | -1.2128 | 0.0000 | |
| GSE53624 | LRRTM1 | 347730 | 146412 | -1.7091 | 0.0000 | |
| GSE63941 | LRRTM1 | 347730 | 238815_at | 0.1366 | 0.3917 | |
| GSE77861 | LRRTM1 | 347730 | 238815_at | 0.0479 | 0.6537 | |
| GSE97050 | LRRTM1 | 347730 | A_23_P131330 | -1.1430 | 0.1585 | |
| TCGA | LRRTM1 | 347730 | RNAseq | -1.5754 | 0.0865 |
Upregulated datasets: 0; Downregulated datasets: 2.
Survival by LRRTM1 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of LRRTM1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LRRTM1 | 347730 | 9 | 2 | 19 | |
| GSE20123 | LRRTM1 | 347730 | 8 | 2 | 20 | |
| GSE43470 | LRRTM1 | 347730 | 5 | 0 | 38 | |
| GSE46452 | LRRTM1 | 347730 | 2 | 3 | 54 | |
| GSE47630 | LRRTM1 | 347730 | 7 | 0 | 33 | |
| GSE54993 | LRRTM1 | 347730 | 0 | 6 | 64 | |
| GSE54994 | LRRTM1 | 347730 | 10 | 0 | 43 | |
| GSE60625 | LRRTM1 | 347730 | 0 | 3 | 8 | |
| GSE74703 | LRRTM1 | 347730 | 5 | 0 | 31 | |
| GSE74704 | LRRTM1 | 347730 | 5 | 1 | 14 | |
| TCGA | LRRTM1 | 347730 | 33 | 3 | 60 |
Total number of gains: 84; Total number of losses: 20; Total Number of normals: 384.
Somatic mutations of LRRTM1:
Generating mutation plots.
Highly correlated genes for LRRTM1:
Showing top 20/395 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LRRTM1 | PYGM | 0.78717 | 4 | 0 | 4 |
| LRRTM1 | FRRS1L | 0.777554 | 3 | 0 | 3 |
| LRRTM1 | FAM107A | 0.774407 | 3 | 0 | 3 |
| LRRTM1 | SCN7A | 0.769264 | 4 | 0 | 4 |
| LRRTM1 | RASD2 | 0.759123 | 3 | 0 | 3 |
| LRRTM1 | KCNMB1 | 0.749696 | 4 | 0 | 4 |
| LRRTM1 | SORCS1 | 0.749179 | 4 | 0 | 4 |
| LRRTM1 | KCNJ9 | 0.746517 | 3 | 0 | 3 |
| LRRTM1 | SH3BGR | 0.745603 | 4 | 0 | 4 |
| LRRTM1 | RBFOX3 | 0.743572 | 3 | 0 | 3 |
| LRRTM1 | KBTBD12 | 0.742018 | 5 | 0 | 5 |
| LRRTM1 | PGR | 0.737535 | 4 | 0 | 4 |
| LRRTM1 | NPY | 0.733504 | 3 | 0 | 3 |
| LRRTM1 | TCEAL2 | 0.730643 | 4 | 0 | 4 |
| LRRTM1 | AQP1 | 0.72569 | 4 | 0 | 4 |
| LRRTM1 | KATNAL1 | 0.725368 | 3 | 0 | 3 |
| LRRTM1 | RBPMS2 | 0.725329 | 4 | 0 | 4 |
| LRRTM1 | PLP1 | 0.724402 | 4 | 0 | 4 |
| LRRTM1 | SLITRK3 | 0.721816 | 3 | 0 | 3 |
| LRRTM1 | ADCY5 | 0.721045 | 5 | 0 | 5 |
For details and further investigation, click here
