| Full name: PHD finger protein 13 | Alias Symbol: MGC43399 | ||
| Type: protein-coding gene | Cytoband: 1p36.31 | ||
| Entrez ID: 148479 | HGNC ID: HGNC:22983 | Ensembl Gene: ENSG00000116273 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of PHF13:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | PHF13 | 148479 | 225005_at | 0.0327 | 0.9613 | |
| GSE26886 | PHF13 | 148479 | 225005_at | 0.3629 | 0.0683 | |
| GSE45670 | PHF13 | 148479 | 225005_at | -0.4548 | 0.0028 | |
| GSE53622 | PHF13 | 148479 | 27388 | -0.4109 | 0.0000 | |
| GSE53624 | PHF13 | 148479 | 27388 | -0.4433 | 0.0000 | |
| GSE63941 | PHF13 | 148479 | 225005_at | -0.4347 | 0.4089 | |
| GSE77861 | PHF13 | 148479 | 225005_at | -0.3723 | 0.1395 | |
| GSE97050 | PHF13 | 148479 | A_32_P58425 | -0.4121 | 0.2010 | |
| SRP007169 | PHF13 | 148479 | RNAseq | -1.0381 | 0.0593 | |
| SRP008496 | PHF13 | 148479 | RNAseq | -0.9681 | 0.0019 | |
| SRP064894 | PHF13 | 148479 | RNAseq | -0.4271 | 0.0345 | |
| SRP133303 | PHF13 | 148479 | RNAseq | -0.2557 | 0.0787 | |
| SRP159526 | PHF13 | 148479 | RNAseq | -0.2019 | 0.6422 | |
| SRP193095 | PHF13 | 148479 | RNAseq | -0.2419 | 0.0788 | |
| SRP219564 | PHF13 | 148479 | RNAseq | -0.5963 | 0.0247 | |
| TCGA | PHF13 | 148479 | RNAseq | 0.0982 | 0.0979 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by PHF13 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of PHF13:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | PHF13 | 148479 | 3 | 6 | 21 | |
| GSE20123 | PHF13 | 148479 | 3 | 5 | 22 | |
| GSE43470 | PHF13 | 148479 | 6 | 5 | 32 | |
| GSE46452 | PHF13 | 148479 | 7 | 1 | 51 | |
| GSE47630 | PHF13 | 148479 | 8 | 4 | 28 | |
| GSE54993 | PHF13 | 148479 | 3 | 2 | 65 | |
| GSE54994 | PHF13 | 148479 | 14 | 3 | 36 | |
| GSE60625 | PHF13 | 148479 | 0 | 0 | 11 | |
| GSE74703 | PHF13 | 148479 | 5 | 3 | 28 | |
| GSE74704 | PHF13 | 148479 | 3 | 0 | 17 | |
| TCGA | PHF13 | 148479 | 12 | 22 | 62 |
Total number of gains: 64; Total number of losses: 51; Total Number of normals: 373.
Somatic mutations of PHF13:
Generating mutation plots.
Highly correlated genes for PHF13:
Showing top 20/220 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| PHF13 | OTUD7B | 0.771862 | 3 | 0 | 3 |
| PHF13 | THAP8 | 0.736449 | 3 | 0 | 3 |
| PHF13 | VRK3 | 0.721271 | 3 | 0 | 3 |
| PHF13 | ICA1L | 0.719037 | 3 | 0 | 3 |
| PHF13 | ARID2 | 0.712442 | 3 | 0 | 3 |
| PHF13 | RSPH3 | 0.703491 | 3 | 0 | 3 |
| PHF13 | CRYZ | 0.699732 | 3 | 0 | 3 |
| PHF13 | C1orf50 | 0.691996 | 4 | 0 | 3 |
| PHF13 | WBP2 | 0.684561 | 3 | 0 | 3 |
| PHF13 | SLC25A14 | 0.683851 | 3 | 0 | 3 |
| PHF13 | NFKBIL1 | 0.682824 | 4 | 0 | 4 |
| PHF13 | CHCHD6 | 0.681988 | 3 | 0 | 3 |
| PHF13 | PFKFB2 | 0.681816 | 3 | 0 | 3 |
| PHF13 | MUL1 | 0.680586 | 3 | 0 | 3 |
| PHF13 | NUDT16 | 0.67543 | 3 | 0 | 3 |
| PHF13 | TSNARE1 | 0.675184 | 4 | 0 | 3 |
| PHF13 | PIN1 | 0.673353 | 3 | 0 | 3 |
| PHF13 | OLFM1 | 0.673076 | 3 | 0 | 3 |
| PHF13 | SH3GLB1 | 0.670504 | 4 | 0 | 4 |
| PHF13 | KLHL21 | 0.667882 | 8 | 0 | 7 |
For details and further investigation, click here
