| Full name: RARA antisense RNA 1 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 17q21.2 | ||
| Entrez ID: 101929693 | HGNC ID: HGNC:49577 | Ensembl Gene: ENSG00000265666 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of RARA-AS1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RARA-AS1 | 101929693 | 228037_at | -0.0031 | 0.9948 | |
| GSE26886 | RARA-AS1 | 101929693 | 228037_at | 0.7653 | 0.0007 | |
| GSE45670 | RARA-AS1 | 101929693 | 228037_at | -0.0948 | 0.5200 | |
| GSE53622 | RARA-AS1 | 101929693 | 52785 | -0.4887 | 0.0023 | |
| GSE53624 | RARA-AS1 | 101929693 | 52785 | -0.5074 | 0.0000 | |
| GSE63941 | RARA-AS1 | 101929693 | 228037_at | -1.1723 | 0.0173 | |
| GSE77861 | RARA-AS1 | 101929693 | 228037_at | 0.2421 | 0.1280 | |
| SRP064894 | RARA-AS1 | 101929693 | RNAseq | 0.3501 | 0.3474 | |
| SRP133303 | RARA-AS1 | 101929693 | RNAseq | -0.1743 | 0.3930 | |
| SRP159526 | RARA-AS1 | 101929693 | RNAseq | 0.1846 | 0.6157 | |
| SRP219564 | RARA-AS1 | 101929693 | RNAseq | -0.2241 | 0.6242 |
Upregulated datasets: 0; Downregulated datasets: 1.
Survival by RARA-AS1 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of RARA-AS1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RARA-AS1 | 101929693 | 8 | 1 | 21 | |
| GSE20123 | RARA-AS1 | 101929693 | 8 | 1 | 21 | |
| GSE43470 | RARA-AS1 | 101929693 | 1 | 2 | 40 | |
| GSE46452 | RARA-AS1 | 101929693 | 34 | 0 | 25 | |
| GSE47630 | RARA-AS1 | 101929693 | 8 | 1 | 31 | |
| GSE54993 | RARA-AS1 | 101929693 | 3 | 4 | 63 | |
| GSE54994 | RARA-AS1 | 101929693 | 8 | 5 | 40 | |
| GSE60625 | RARA-AS1 | 101929693 | 4 | 0 | 7 | |
| GSE74703 | RARA-AS1 | 101929693 | 1 | 1 | 34 | |
| GSE74704 | RARA-AS1 | 101929693 | 5 | 1 | 14 |
Total number of gains: 80; Total number of losses: 16; Total Number of normals: 296.
Somatic mutations of RARA-AS1:
Generating mutation plots.
Highly correlated genes for RARA-AS1:
Showing top 20/50 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RARA-AS1 | EGFL7 | 0.710524 | 3 | 0 | 3 |
| RARA-AS1 | RASD1 | 0.682926 | 3 | 0 | 3 |
| RARA-AS1 | PRRX2 | 0.643253 | 3 | 0 | 3 |
| RARA-AS1 | LHFPL2 | 0.639948 | 3 | 0 | 3 |
| RARA-AS1 | THAP3 | 0.62099 | 3 | 0 | 3 |
| RARA-AS1 | ZNF446 | 0.619525 | 3 | 0 | 3 |
| RARA-AS1 | MSC | 0.618962 | 3 | 0 | 3 |
| RARA-AS1 | SLC45A1 | 0.618732 | 3 | 0 | 3 |
| RARA-AS1 | SDF4 | 0.616028 | 3 | 0 | 3 |
| RARA-AS1 | KLHL22 | 0.608213 | 3 | 0 | 3 |
| RARA-AS1 | IER5L | 0.605007 | 3 | 0 | 3 |
| RARA-AS1 | SLC39A13 | 0.604761 | 3 | 0 | 3 |
| RARA-AS1 | WFS1 | 0.602759 | 3 | 0 | 3 |
| RARA-AS1 | CASC15 | 0.600773 | 3 | 0 | 3 |
| RARA-AS1 | SSBP4 | 0.598324 | 3 | 0 | 3 |
| RARA-AS1 | HTRA1 | 0.59095 | 3 | 0 | 3 |
| RARA-AS1 | ZNF423 | 0.589845 | 3 | 0 | 3 |
| RARA-AS1 | KIAA1549 | 0.588874 | 3 | 0 | 3 |
| RARA-AS1 | OLFML2B | 0.58804 | 3 | 0 | 3 |
| RARA-AS1 | ICAM1 | 0.585839 | 3 | 0 | 3 |
For details and further investigation, click here
