| Full name: repetin | Alias Symbol: FLJ39117 | ||
| Type: protein-coding gene | Cytoband: 1q21.3 | ||
| Entrez ID: 126638 | HGNC ID: HGNC:26809 | Ensembl Gene: ENSG00000215853 | OMIM ID: 613259 |
| Drug and gene relationship at DGIdb | |||
Expression of RPTN:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RPTN | 126638 | 1553454_at | -1.3258 | 0.4291 | |
| GSE26886 | RPTN | 126638 | 1553454_at | -1.0501 | 0.0251 | |
| GSE45670 | RPTN | 126638 | 1553454_at | 0.1976 | 0.8365 | |
| GSE53622 | RPTN | 126638 | 81035 | -1.4113 | 0.0009 | |
| GSE53624 | RPTN | 126638 | 81035 | -2.5174 | 0.0000 | |
| GSE63941 | RPTN | 126638 | 1553454_at | 0.2448 | 0.6279 | |
| GSE77861 | RPTN | 126638 | 1553454_at | 0.2349 | 0.8692 | |
| SRP007169 | RPTN | 126638 | RNAseq | -1.0775 | 0.2892 | |
| SRP064894 | RPTN | 126638 | RNAseq | -2.8467 | 0.0000 | |
| SRP133303 | RPTN | 126638 | RNAseq | -2.2944 | 0.0004 | |
| TCGA | RPTN | 126638 | RNAseq | 0.5717 | 0.4224 |
Upregulated datasets: 0; Downregulated datasets: 5.
Survival by RPTN expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of RPTN:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RPTN | 126638 | 15 | 0 | 15 | |
| GSE20123 | RPTN | 126638 | 15 | 0 | 15 | |
| GSE43470 | RPTN | 126638 | 6 | 2 | 35 | |
| GSE46452 | RPTN | 126638 | 2 | 1 | 56 | |
| GSE47630 | RPTN | 126638 | 15 | 0 | 25 | |
| GSE54993 | RPTN | 126638 | 0 | 4 | 66 | |
| GSE54994 | RPTN | 126638 | 15 | 0 | 38 | |
| GSE60625 | RPTN | 126638 | 0 | 0 | 11 | |
| GSE74703 | RPTN | 126638 | 6 | 1 | 29 | |
| GSE74704 | RPTN | 126638 | 7 | 0 | 13 | |
| TCGA | RPTN | 126638 | 39 | 2 | 55 |
Total number of gains: 120; Total number of losses: 10; Total Number of normals: 358.
Somatic mutations of RPTN:
Generating mutation plots.
Highly correlated genes for RPTN:
Showing top 20/165 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RPTN | FETUB | 0.701314 | 4 | 0 | 4 |
| RPTN | DSG4 | 0.61811 | 3 | 0 | 3 |
| RPTN | TM7SF2 | 0.604923 | 5 | 0 | 5 |
| RPTN | KRT80 | 0.604431 | 5 | 0 | 5 |
| RPTN | ACER1 | 0.602099 | 4 | 0 | 3 |
| RPTN | GDPD3 | 0.590344 | 4 | 0 | 4 |
| RPTN | CFTR | 0.588469 | 4 | 0 | 3 |
| RPTN | KPRP | 0.585023 | 3 | 0 | 3 |
| RPTN | P2RY1 | 0.584069 | 5 | 0 | 4 |
| RPTN | SERPINB12 | 0.582253 | 5 | 0 | 3 |
| RPTN | TMEM154 | 0.580462 | 4 | 0 | 4 |
| RPTN | UPK1A | 0.579587 | 4 | 0 | 3 |
| RPTN | TMEM40 | 0.574901 | 4 | 0 | 3 |
| RPTN | FLG-AS1 | 0.574845 | 5 | 0 | 3 |
| RPTN | UPK2 | 0.573959 | 4 | 0 | 3 |
| RPTN | PERP | 0.573728 | 3 | 0 | 3 |
| RPTN | BNIPL | 0.572589 | 4 | 0 | 3 |
| RPTN | ME1 | 0.571019 | 6 | 0 | 5 |
| RPTN | ATP13A4 | 0.570646 | 6 | 0 | 5 |
| RPTN | SLC16A6 | 0.5699 | 4 | 0 | 4 |
For details and further investigation, click here
