| Full name: RNA pseudouridine synthase D3 | Alias Symbol: MGC29784 | ||
| Type: protein-coding gene | Cytoband: 3p25.3 | ||
| Entrez ID: 285367 | HGNC ID: HGNC:28437 | Ensembl Gene: ENSG00000156990 | OMIM ID: 617759 |
| Drug and gene relationship at DGIdb | |||
Expression of RPUSD3:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RPUSD3 | 285367 | 225743_at | -0.3867 | 0.1717 | |
| GSE26886 | RPUSD3 | 285367 | 1555916_at | 0.1982 | 0.1273 | |
| GSE45670 | RPUSD3 | 285367 | 1555916_at | 0.1333 | 0.0977 | |
| GSE53622 | RPUSD3 | 285367 | 63574 | -0.4259 | 0.0000 | |
| GSE53624 | RPUSD3 | 285367 | 63574 | -0.4769 | 0.0000 | |
| GSE63941 | RPUSD3 | 285367 | 225743_at | 1.5492 | 0.0083 | |
| GSE77861 | RPUSD3 | 285367 | 1555916_at | 0.0192 | 0.9249 | |
| GSE97050 | RPUSD3 | 285367 | A_23_P255916 | 0.1071 | 0.6682 | |
| SRP007169 | RPUSD3 | 285367 | RNAseq | -1.1410 | 0.0252 | |
| SRP008496 | RPUSD3 | 285367 | RNAseq | -1.2148 | 0.0001 | |
| SRP064894 | RPUSD3 | 285367 | RNAseq | -0.1449 | 0.5166 | |
| SRP133303 | RPUSD3 | 285367 | RNAseq | -0.5533 | 0.0012 | |
| SRP159526 | RPUSD3 | 285367 | RNAseq | -0.5154 | 0.0427 | |
| SRP193095 | RPUSD3 | 285367 | RNAseq | -0.6126 | 0.0000 | |
| SRP219564 | RPUSD3 | 285367 | RNAseq | -0.4244 | 0.1744 | |
| TCGA | RPUSD3 | 285367 | RNAseq | 0.0112 | 0.8576 |
Upregulated datasets: 1; Downregulated datasets: 2.
Survival by RPUSD3 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of RPUSD3:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RPUSD3 | 285367 | 1 | 18 | 11 | |
| GSE20123 | RPUSD3 | 285367 | 1 | 18 | 11 | |
| GSE43470 | RPUSD3 | 285367 | 1 | 20 | 22 | |
| GSE46452 | RPUSD3 | 285367 | 2 | 17 | 40 | |
| GSE47630 | RPUSD3 | 285367 | 3 | 22 | 15 | |
| GSE54993 | RPUSD3 | 285367 | 6 | 1 | 63 | |
| GSE54994 | RPUSD3 | 285367 | 3 | 31 | 19 | |
| GSE60625 | RPUSD3 | 285367 | 5 | 0 | 6 | |
| GSE74703 | RPUSD3 | 285367 | 1 | 16 | 19 | |
| GSE74704 | RPUSD3 | 285367 | 1 | 11 | 8 | |
| TCGA | RPUSD3 | 285367 | 5 | 65 | 26 |
Total number of gains: 29; Total number of losses: 219; Total Number of normals: 240.
Somatic mutations of RPUSD3:
Generating mutation plots.
Highly correlated genes for RPUSD3:
Showing top 20/139 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RPUSD3 | ELP3 | 0.822959 | 3 | 0 | 3 |
| RPUSD3 | TOM1L1 | 0.77142 | 3 | 0 | 3 |
| RPUSD3 | CEP57 | 0.751379 | 3 | 0 | 3 |
| RPUSD3 | PMF1 | 0.740658 | 3 | 0 | 3 |
| RPUSD3 | RSL1D1 | 0.739164 | 3 | 0 | 3 |
| RPUSD3 | ABHD3 | 0.734368 | 3 | 0 | 3 |
| RPUSD3 | GMPPB | 0.730473 | 3 | 0 | 3 |
| RPUSD3 | ELOVL7 | 0.729603 | 3 | 0 | 3 |
| RPUSD3 | ARG2 | 0.728041 | 3 | 0 | 3 |
| RPUSD3 | GPR108 | 0.717303 | 3 | 0 | 3 |
| RPUSD3 | LYPD5 | 0.717083 | 3 | 0 | 3 |
| RPUSD3 | STRN | 0.71088 | 3 | 0 | 3 |
| RPUSD3 | NME6 | 0.709307 | 4 | 0 | 4 |
| RPUSD3 | VANGL1 | 0.709248 | 3 | 0 | 3 |
| RPUSD3 | ATRIP | 0.705074 | 3 | 0 | 3 |
| RPUSD3 | C8orf37 | 0.70293 | 3 | 0 | 3 |
| RPUSD3 | RCC1 | 0.691816 | 3 | 0 | 3 |
| RPUSD3 | WDR61 | 0.691573 | 4 | 0 | 3 |
| RPUSD3 | COA3 | 0.691096 | 3 | 0 | 3 |
| RPUSD3 | RB1 | 0.691064 | 3 | 0 | 3 |
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