| Full name: ribosomal RNA processing 9, U3 small nucleolar RNA binding protein | Alias Symbol: U3-55K | ||
| Type: protein-coding gene | Cytoband: 3p21.2 | ||
| Entrez ID: 9136 | HGNC ID: HGNC:16829 | Ensembl Gene: ENSG00000114767 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Screen Evidence:
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Expression of RRP9:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RRP9 | 9136 | 204133_at | 0.6335 | 0.0400 | |
| GSE20347 | RRP9 | 9136 | 204133_at | 0.1657 | 0.3831 | |
| GSE23400 | RRP9 | 9136 | 204133_at | 0.1693 | 0.0013 | |
| GSE26886 | RRP9 | 9136 | 204133_at | 0.1693 | 0.2212 | |
| GSE29001 | RRP9 | 9136 | 204133_at | 0.2174 | 0.3240 | |
| GSE38129 | RRP9 | 9136 | 204133_at | 0.2686 | 0.0282 | |
| GSE45670 | RRP9 | 9136 | 204133_at | 0.3120 | 0.0246 | |
| GSE53622 | RRP9 | 9136 | 95060 | 0.4050 | 0.0000 | |
| GSE53624 | RRP9 | 9136 | 95060 | 0.5790 | 0.0000 | |
| GSE63941 | RRP9 | 9136 | 204133_at | 0.3774 | 0.2387 | |
| GSE77861 | RRP9 | 9136 | 204133_at | 0.0910 | 0.4992 | |
| GSE97050 | RRP9 | 9136 | A_23_P6802 | 0.8408 | 0.1163 | |
| SRP007169 | RRP9 | 9136 | RNAseq | 0.0604 | 0.8918 | |
| SRP008496 | RRP9 | 9136 | RNAseq | 0.1610 | 0.5893 | |
| SRP064894 | RRP9 | 9136 | RNAseq | 0.3178 | 0.2127 | |
| SRP133303 | RRP9 | 9136 | RNAseq | 0.3975 | 0.1085 | |
| SRP159526 | RRP9 | 9136 | RNAseq | 0.3236 | 0.3420 | |
| SRP193095 | RRP9 | 9136 | RNAseq | 0.2527 | 0.0907 | |
| SRP219564 | RRP9 | 9136 | RNAseq | 0.3792 | 0.4247 | |
| TCGA | RRP9 | 9136 | RNAseq | 0.2883 | 0.0002 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by RRP9 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of RRP9:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RRP9 | 9136 | 0 | 18 | 12 | |
| GSE20123 | RRP9 | 9136 | 0 | 19 | 11 | |
| GSE43470 | RRP9 | 9136 | 0 | 18 | 25 | |
| GSE46452 | RRP9 | 9136 | 2 | 17 | 40 | |
| GSE47630 | RRP9 | 9136 | 1 | 24 | 15 | |
| GSE54993 | RRP9 | 9136 | 6 | 2 | 62 | |
| GSE54994 | RRP9 | 9136 | 0 | 34 | 19 | |
| GSE60625 | RRP9 | 9136 | 5 | 0 | 6 | |
| GSE74703 | RRP9 | 9136 | 0 | 14 | 22 | |
| GSE74704 | RRP9 | 9136 | 0 | 12 | 8 | |
| TCGA | RRP9 | 9136 | 0 | 78 | 18 |
Total number of gains: 14; Total number of losses: 236; Total Number of normals: 238.
Somatic mutations of RRP9:
Generating mutation plots.
Highly correlated genes for RRP9:
Showing top 20/1422 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RRP9 | CDCA2 | 0.82484 | 3 | 0 | 3 |
| RRP9 | CSTF2T | 0.791986 | 3 | 0 | 3 |
| RRP9 | SPNS1 | 0.790662 | 3 | 0 | 3 |
| RRP9 | NIPA2 | 0.768576 | 3 | 0 | 3 |
| RRP9 | NACC1 | 0.757111 | 4 | 0 | 4 |
| RRP9 | CRCP | 0.755766 | 3 | 0 | 3 |
| RRP9 | ALG10 | 0.755055 | 3 | 0 | 3 |
| RRP9 | KTI12 | 0.740473 | 3 | 0 | 3 |
| RRP9 | ATRIP | 0.733253 | 3 | 0 | 3 |
| RRP9 | EBNA1BP2 | 0.727647 | 3 | 0 | 3 |
| RRP9 | CTU2 | 0.723086 | 5 | 0 | 4 |
| RRP9 | PPP1R9B | 0.719682 | 4 | 0 | 4 |
| RRP9 | CMIP | 0.719365 | 4 | 0 | 4 |
| RRP9 | MAP2K5 | 0.715156 | 3 | 0 | 3 |
| RRP9 | ZNF121 | 0.715102 | 3 | 0 | 3 |
| RRP9 | DHX33 | 0.715092 | 6 | 0 | 6 |
| RRP9 | FBXL19 | 0.713089 | 4 | 0 | 4 |
| RRP9 | IRF2BPL | 0.710323 | 3 | 0 | 3 |
| RRP9 | B3GALT6 | 0.70803 | 4 | 0 | 4 |
| RRP9 | DHX37 | 0.707915 | 6 | 0 | 5 |
For details and further investigation, click here
