| Full name: sorting nexin 13 | Alias Symbol: RGS-PX1|KIAA0713 | ||
| Type: protein-coding gene | Cytoband: 7p21.1 | ||
| Entrez ID: 23161 | HGNC ID: HGNC:21335 | Ensembl Gene: ENSG00000071189 | OMIM ID: 606589 |
| Drug and gene relationship at DGIdb | |||
Screen Evidence:
| |||
Expression of SNX13:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SNX13 | 23161 | 227031_at | -0.1370 | 0.7523 | |
| GSE20347 | SNX13 | 23161 | 213292_s_at | 0.2670 | 0.1710 | |
| GSE23400 | SNX13 | 23161 | 213292_s_at | 0.4096 | 0.0000 | |
| GSE26886 | SNX13 | 23161 | 227031_at | -0.4234 | 0.2931 | |
| GSE29001 | SNX13 | 23161 | 213292_s_at | 0.0327 | 0.9097 | |
| GSE38129 | SNX13 | 23161 | 213292_s_at | 0.4660 | 0.0021 | |
| GSE45670 | SNX13 | 23161 | 213292_s_at | 0.3614 | 0.0072 | |
| GSE53622 | SNX13 | 23161 | 76381 | 0.2514 | 0.0001 | |
| GSE53624 | SNX13 | 23161 | 76381 | 0.2952 | 0.0001 | |
| GSE63941 | SNX13 | 23161 | 213292_s_at | 0.0555 | 0.9287 | |
| GSE77861 | SNX13 | 23161 | 213292_s_at | 0.3253 | 0.1115 | |
| GSE97050 | SNX13 | 23161 | A_23_P256342 | 0.1775 | 0.4929 | |
| SRP007169 | SNX13 | 23161 | RNAseq | -0.4174 | 0.2537 | |
| SRP008496 | SNX13 | 23161 | RNAseq | -0.0794 | 0.6928 | |
| SRP064894 | SNX13 | 23161 | RNAseq | 0.0256 | 0.9081 | |
| SRP133303 | SNX13 | 23161 | RNAseq | 0.4449 | 0.0048 | |
| SRP159526 | SNX13 | 23161 | RNAseq | -0.0585 | 0.8021 | |
| SRP193095 | SNX13 | 23161 | RNAseq | -0.0384 | 0.6716 | |
| SRP219564 | SNX13 | 23161 | RNAseq | 0.0071 | 0.9813 | |
| TCGA | SNX13 | 23161 | RNAseq | -0.1062 | 0.0332 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by SNX13 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of SNX13:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SNX13 | 23161 | 15 | 2 | 13 | |
| GSE20123 | SNX13 | 23161 | 15 | 2 | 13 | |
| GSE43470 | SNX13 | 23161 | 5 | 0 | 38 | |
| GSE46452 | SNX13 | 23161 | 11 | 1 | 47 | |
| GSE47630 | SNX13 | 23161 | 9 | 1 | 30 | |
| GSE54993 | SNX13 | 23161 | 0 | 6 | 64 | |
| GSE54994 | SNX13 | 23161 | 21 | 1 | 31 | |
| GSE60625 | SNX13 | 23161 | 0 | 0 | 11 | |
| GSE74703 | SNX13 | 23161 | 5 | 0 | 31 | |
| GSE74704 | SNX13 | 23161 | 9 | 2 | 9 | |
| TCGA | SNX13 | 23161 | 56 | 5 | 35 |
Total number of gains: 146; Total number of losses: 20; Total Number of normals: 322.
Somatic mutations of SNX13:
Generating mutation plots.
Highly correlated genes for SNX13:
Showing top 20/510 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SNX13 | HSD17B11 | 0.784105 | 3 | 0 | 3 |
| SNX13 | NUP107 | 0.749831 | 3 | 0 | 3 |
| SNX13 | PLAGL2 | 0.746614 | 3 | 0 | 3 |
| SNX13 | CTDSPL2 | 0.735405 | 3 | 0 | 3 |
| SNX13 | NSMAF | 0.73379 | 3 | 0 | 3 |
| SNX13 | DCTN4 | 0.732913 | 4 | 0 | 4 |
| SNX13 | CWF19L1 | 0.720584 | 3 | 0 | 3 |
| SNX13 | NFKB1 | 0.719386 | 3 | 0 | 3 |
| SNX13 | GTF2B | 0.717058 | 4 | 0 | 4 |
| SNX13 | NR2C1 | 0.711845 | 3 | 0 | 3 |
| SNX13 | YWHAB | 0.711403 | 3 | 0 | 3 |
| SNX13 | AJUBA | 0.705646 | 5 | 0 | 5 |
| SNX13 | SEC63 | 0.701511 | 4 | 0 | 4 |
| SNX13 | SNN | 0.697432 | 5 | 0 | 4 |
| SNX13 | YIPF4 | 0.695442 | 3 | 0 | 3 |
| SNX13 | FRS2 | 0.694455 | 3 | 0 | 3 |
| SNX13 | SLC25A12 | 0.685951 | 3 | 0 | 3 |
| SNX13 | TYW3 | 0.684898 | 4 | 0 | 4 |
| SNX13 | UBE2Q2 | 0.684781 | 4 | 0 | 3 |
| SNX13 | RYBP | 0.683924 | 4 | 0 | 3 |
For details and further investigation, click here
