| Full name: synaptogyrin 4 | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 19q13.33 | ||
| Entrez ID: 23546 | HGNC ID: HGNC:11502 | Ensembl Gene: ENSG00000105467 | OMIM ID: 608373 |
| Drug and gene relationship at DGIdb | |||
Expression of SYNGR4:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SYNGR4 | 23546 | 206719_at | 0.3492 | 0.2334 | |
| GSE20347 | SYNGR4 | 23546 | 206719_at | -0.0207 | 0.8255 | |
| GSE23400 | SYNGR4 | 23546 | 206719_at | -0.0515 | 0.1553 | |
| GSE26886 | SYNGR4 | 23546 | 206719_at | 0.0914 | 0.4927 | |
| GSE29001 | SYNGR4 | 23546 | 206719_at | -0.0207 | 0.8733 | |
| GSE38129 | SYNGR4 | 23546 | 206719_at | -0.0347 | 0.7220 | |
| GSE45670 | SYNGR4 | 23546 | 206719_at | 0.1647 | 0.0228 | |
| GSE53622 | SYNGR4 | 23546 | 136442 | 0.3185 | 0.0022 | |
| GSE53624 | SYNGR4 | 23546 | 136442 | 0.4082 | 0.0000 | |
| GSE63941 | SYNGR4 | 23546 | 206719_at | 0.3477 | 0.5348 | |
| GSE77861 | SYNGR4 | 23546 | 206719_at | -0.0763 | 0.4825 | |
| GSE97050 | SYNGR4 | 23546 | A_23_P164927 | 0.6873 | 0.1692 | |
| TCGA | SYNGR4 | 23546 | RNAseq | 0.7961 | 0.2750 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by SYNGR4 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of SYNGR4:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SYNGR4 | 23546 | 4 | 4 | 22 | |
| GSE20123 | SYNGR4 | 23546 | 4 | 3 | 23 | |
| GSE43470 | SYNGR4 | 23546 | 4 | 11 | 28 | |
| GSE46452 | SYNGR4 | 23546 | 45 | 1 | 13 | |
| GSE47630 | SYNGR4 | 23546 | 9 | 6 | 25 | |
| GSE54993 | SYNGR4 | 23546 | 17 | 4 | 49 | |
| GSE54994 | SYNGR4 | 23546 | 4 | 14 | 35 | |
| GSE60625 | SYNGR4 | 23546 | 9 | 0 | 2 | |
| GSE74703 | SYNGR4 | 23546 | 4 | 7 | 25 | |
| GSE74704 | SYNGR4 | 23546 | 4 | 1 | 15 | |
| TCGA | SYNGR4 | 23546 | 15 | 18 | 63 |
Total number of gains: 119; Total number of losses: 69; Total Number of normals: 300.
Somatic mutations of SYNGR4:
Generating mutation plots.
Highly correlated genes for SYNGR4:
Showing top 20/336 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SYNGR4 | CASP14 | 0.788806 | 3 | 0 | 3 |
| SYNGR4 | DEFA4 | 0.685332 | 3 | 0 | 3 |
| SYNGR4 | TMEM63C | 0.674821 | 4 | 0 | 3 |
| SYNGR4 | RAI1 | 0.646865 | 4 | 0 | 4 |
| SYNGR4 | ARHGAP39 | 0.644061 | 3 | 0 | 3 |
| SYNGR4 | LBP | 0.642554 | 6 | 0 | 5 |
| SYNGR4 | CA9 | 0.642421 | 4 | 0 | 3 |
| SYNGR4 | GDF5 | 0.640686 | 6 | 0 | 5 |
| SYNGR4 | IL1RAPL2 | 0.638059 | 4 | 0 | 4 |
| SYNGR4 | CALCA | 0.635199 | 4 | 0 | 4 |
| SYNGR4 | GPA33 | 0.63423 | 6 | 0 | 5 |
| SYNGR4 | GPD1 | 0.631991 | 3 | 0 | 3 |
| SYNGR4 | CGA | 0.629646 | 4 | 0 | 4 |
| SYNGR4 | DNAH3 | 0.629379 | 4 | 0 | 4 |
| SYNGR4 | KCNH4 | 0.626398 | 5 | 0 | 4 |
| SYNGR4 | DNTT | 0.624898 | 3 | 0 | 3 |
| SYNGR4 | GPR4 | 0.62413 | 3 | 0 | 3 |
| SYNGR4 | TTR | 0.620786 | 4 | 0 | 3 |
| SYNGR4 | GPR12 | 0.617846 | 5 | 0 | 5 |
| SYNGR4 | PRPS1L1 | 0.616128 | 6 | 0 | 5 |
For details and further investigation, click here
