| Full name: trafficking protein particle complex 13 | Alias Symbol: FLJ13611|MGC48585 | ||
| Type: protein-coding gene | Cytoband: 5q12.3 | ||
| Entrez ID: 80006 | HGNC ID: HGNC:25828 | Ensembl Gene: ENSG00000113597 | OMIM ID: |
Screen Evidence:
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Expression of TRAPPC13:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | TRAPPC13 | 80006 | 218674_at | -0.5735 | 0.3373 | |
| GSE20347 | TRAPPC13 | 80006 | 218674_at | -0.8447 | 0.0000 | |
| GSE23400 | TRAPPC13 | 80006 | 218674_at | -0.0349 | 0.4631 | |
| GSE26886 | TRAPPC13 | 80006 | 218674_at | -0.8161 | 0.0270 | |
| GSE29001 | TRAPPC13 | 80006 | 218674_at | -0.3956 | 0.3579 | |
| GSE38129 | TRAPPC13 | 80006 | 218674_at | -0.7034 | 0.0000 | |
| GSE45670 | TRAPPC13 | 80006 | 218674_at | -0.5737 | 0.0043 | |
| GSE53622 | TRAPPC13 | 80006 | 98793 | -0.1844 | 0.0006 | |
| GSE53624 | TRAPPC13 | 80006 | 98793 | -0.2625 | 0.0012 | |
| GSE63941 | TRAPPC13 | 80006 | 218674_at | -0.9261 | 0.1249 | |
| GSE77861 | TRAPPC13 | 80006 | 218674_at | -0.5325 | 0.0271 | |
| SRP007169 | TRAPPC13 | 80006 | RNAseq | -0.5826 | 0.1919 | |
| SRP008496 | TRAPPC13 | 80006 | RNAseq | -0.5128 | 0.0683 | |
| SRP064894 | TRAPPC13 | 80006 | RNAseq | -0.2511 | 0.0797 | |
| SRP133303 | TRAPPC13 | 80006 | RNAseq | -0.1789 | 0.1972 | |
| SRP159526 | TRAPPC13 | 80006 | RNAseq | -0.3037 | 0.3588 | |
| SRP193095 | TRAPPC13 | 80006 | RNAseq | -0.5921 | 0.0000 | |
| SRP219564 | TRAPPC13 | 80006 | RNAseq | -0.4864 | 0.0733 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by TRAPPC13 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of TRAPPC13:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | TRAPPC13 | 80006 | 0 | 13 | 17 | |
| GSE20123 | TRAPPC13 | 80006 | 0 | 13 | 17 | |
| GSE43470 | TRAPPC13 | 80006 | 1 | 13 | 29 | |
| GSE46452 | TRAPPC13 | 80006 | 0 | 28 | 31 | |
| GSE47630 | TRAPPC13 | 80006 | 2 | 17 | 21 | |
| GSE54993 | TRAPPC13 | 80006 | 8 | 1 | 61 | |
| GSE54994 | TRAPPC13 | 80006 | 1 | 19 | 33 | |
| GSE60625 | TRAPPC13 | 80006 | 0 | 0 | 11 | |
| GSE74703 | TRAPPC13 | 80006 | 1 | 9 | 26 | |
| GSE74704 | TRAPPC13 | 80006 | 0 | 6 | 14 | |
| TCGA | TRAPPC13 | 80006 | 3 | 50 | 43 |
Total number of gains: 16; Total number of losses: 169; Total Number of normals: 303.
Somatic mutations of TRAPPC13:
Generating mutation plots.
Highly correlated genes for TRAPPC13:
Showing top 20/631 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| TRAPPC13 | NDFIP2 | 0.742983 | 3 | 0 | 3 |
| TRAPPC13 | NIPSNAP3A | 0.725777 | 4 | 0 | 4 |
| TRAPPC13 | CCDC126 | 0.714834 | 4 | 0 | 4 |
| TRAPPC13 | PEX7 | 0.690604 | 3 | 0 | 3 |
| TRAPPC13 | SC5D | 0.689126 | 3 | 0 | 3 |
| TRAPPC13 | TMEM161B | 0.681759 | 5 | 0 | 4 |
| TRAPPC13 | PAQR5 | 0.673498 | 3 | 0 | 3 |
| TRAPPC13 | WDR61 | 0.665158 | 4 | 0 | 3 |
| TRAPPC13 | SLC25A43 | 0.664331 | 3 | 0 | 3 |
| TRAPPC13 | SH3YL1 | 0.66189 | 5 | 0 | 4 |
| TRAPPC13 | PRSS2 | 0.658095 | 3 | 0 | 3 |
| TRAPPC13 | MRPS36 | 0.657353 | 6 | 0 | 5 |
| TRAPPC13 | DHX29 | 0.650387 | 11 | 0 | 10 |
| TRAPPC13 | CPEB2 | 0.649579 | 4 | 0 | 3 |
| TRAPPC13 | LACC1 | 0.647805 | 6 | 0 | 6 |
| TRAPPC13 | TRIP4 | 0.644582 | 4 | 0 | 3 |
| TRAPPC13 | PPIP5K2 | 0.640468 | 9 | 0 | 8 |
| TRAPPC13 | TRIP11 | 0.639781 | 4 | 0 | 3 |
| TRAPPC13 | AKAP11 | 0.639647 | 8 | 0 | 8 |
| TRAPPC13 | CST6 | 0.636662 | 3 | 0 | 3 |
For details and further investigation, click here
