| Full name: nipsnap homolog 3A | Alias Symbol: DKFZp564D177|FLJ13953|HSPC299|MGC14553 | ||
| Type: protein-coding gene | Cytoband: 9q31.1 | ||
| Entrez ID: 25934 | HGNC ID: HGNC:23619 | Ensembl Gene: ENSG00000136783 | OMIM ID: 608871 |
| Drug and gene relationship at DGIdb | |||
Expression of NIPSNAP3A:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | NIPSNAP3A | 25934 | 224436_s_at | -0.6499 | 0.1996 | |
| GSE26886 | NIPSNAP3A | 25934 | 224436_s_at | -1.6448 | 0.0000 | |
| GSE45670 | NIPSNAP3A | 25934 | 224436_s_at | -0.6105 | 0.0055 | |
| GSE53622 | NIPSNAP3A | 25934 | 115448 | -0.7815 | 0.0000 | |
| GSE53624 | NIPSNAP3A | 25934 | 115448 | -0.6362 | 0.0000 | |
| GSE63941 | NIPSNAP3A | 25934 | 224436_s_at | -0.4935 | 0.4513 | |
| GSE77861 | NIPSNAP3A | 25934 | 224436_s_at | -1.4960 | 0.0037 | |
| GSE97050 | NIPSNAP3A | 25934 | A_23_P20606 | -0.3778 | 0.1496 | |
| SRP007169 | NIPSNAP3A | 25934 | RNAseq | -0.7346 | 0.1124 | |
| SRP008496 | NIPSNAP3A | 25934 | RNAseq | -0.5887 | 0.0150 | |
| SRP064894 | NIPSNAP3A | 25934 | RNAseq | -0.3056 | 0.1469 | |
| SRP133303 | NIPSNAP3A | 25934 | RNAseq | -0.4636 | 0.0131 | |
| SRP159526 | NIPSNAP3A | 25934 | RNAseq | -0.9000 | 0.0060 | |
| SRP193095 | NIPSNAP3A | 25934 | RNAseq | -1.2633 | 0.0000 | |
| SRP219564 | NIPSNAP3A | 25934 | RNAseq | -0.6001 | 0.0331 | |
| TCGA | NIPSNAP3A | 25934 | RNAseq | -0.0680 | 0.3582 |
Upregulated datasets: 0; Downregulated datasets: 3.
Survival by NIPSNAP3A expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of NIPSNAP3A:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | NIPSNAP3A | 25934 | 4 | 10 | 16 | |
| GSE20123 | NIPSNAP3A | 25934 | 5 | 9 | 16 | |
| GSE43470 | NIPSNAP3A | 25934 | 7 | 3 | 33 | |
| GSE46452 | NIPSNAP3A | 25934 | 6 | 13 | 40 | |
| GSE47630 | NIPSNAP3A | 25934 | 1 | 17 | 22 | |
| GSE54993 | NIPSNAP3A | 25934 | 3 | 3 | 64 | |
| GSE54994 | NIPSNAP3A | 25934 | 9 | 10 | 34 | |
| GSE60625 | NIPSNAP3A | 25934 | 0 | 0 | 11 | |
| GSE74703 | NIPSNAP3A | 25934 | 6 | 3 | 27 | |
| GSE74704 | NIPSNAP3A | 25934 | 2 | 6 | 12 | |
| TCGA | NIPSNAP3A | 25934 | 26 | 21 | 49 |
Total number of gains: 69; Total number of losses: 95; Total Number of normals: 324.
Somatic mutations of NIPSNAP3A:
Generating mutation plots.
Highly correlated genes for NIPSNAP3A:
Showing top 20/1373 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| NIPSNAP3A | ACVR2A | 0.783727 | 3 | 0 | 3 |
| NIPSNAP3A | ZNF85 | 0.777838 | 3 | 0 | 3 |
| NIPSNAP3A | ZRANB1 | 0.775425 | 3 | 0 | 3 |
| NIPSNAP3A | PRKAG1 | 0.761864 | 4 | 0 | 4 |
| NIPSNAP3A | PUS7L | 0.760166 | 3 | 0 | 3 |
| NIPSNAP3A | STX17 | 0.759394 | 6 | 0 | 6 |
| NIPSNAP3A | GDAP2 | 0.758506 | 3 | 0 | 3 |
| NIPSNAP3A | OSBPL8 | 0.756788 | 3 | 0 | 3 |
| NIPSNAP3A | ZNF564 | 0.754836 | 4 | 0 | 4 |
| NIPSNAP3A | SLC35A3 | 0.754306 | 6 | 0 | 6 |
| NIPSNAP3A | MNS1 | 0.752481 | 3 | 0 | 3 |
| NIPSNAP3A | GPD1L | 0.748052 | 7 | 0 | 7 |
| NIPSNAP3A | ZNF844 | 0.747682 | 6 | 0 | 6 |
| NIPSNAP3A | SCP2 | 0.747623 | 7 | 0 | 7 |
| NIPSNAP3A | HEMK1 | 0.747421 | 5 | 0 | 5 |
| NIPSNAP3A | APPL1 | 0.746515 | 7 | 0 | 7 |
| NIPSNAP3A | ZNF253 | 0.742157 | 3 | 0 | 3 |
| NIPSNAP3A | NDUFB3 | 0.742148 | 5 | 0 | 5 |
| NIPSNAP3A | WASF2 | 0.740845 | 3 | 0 | 3 |
| NIPSNAP3A | SCAF11 | 0.74042 | 3 | 0 | 3 |
For details and further investigation, click here
