| Full name: tRNA methyltransferase 13 homolog | Alias Symbol: FLJ10287|FLJ11219 | ||
| Type: protein-coding gene | Cytoband: 1p21.2 | ||
| Entrez ID: 54482 | HGNC ID: HGNC:25502 | Ensembl Gene: ENSG00000122435 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of TRMT13:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | TRMT13 | 54482 | 219130_at | 0.0602 | 0.9165 | |
| GSE20347 | TRMT13 | 54482 | 219130_at | -0.4028 | 0.0108 | |
| GSE23400 | TRMT13 | 54482 | 219130_at | 0.1325 | 0.1461 | |
| GSE26886 | TRMT13 | 54482 | 219130_at | -1.0769 | 0.0002 | |
| GSE29001 | TRMT13 | 54482 | 219130_at | 0.1932 | 0.6976 | |
| GSE38129 | TRMT13 | 54482 | 219130_at | -0.2005 | 0.1965 | |
| GSE45670 | TRMT13 | 54482 | 219130_at | -0.1969 | 0.2386 | |
| GSE53622 | TRMT13 | 54482 | 6494 | -0.0230 | 0.7225 | |
| GSE53624 | TRMT13 | 54482 | 48712 | -0.1334 | 0.0122 | |
| GSE63941 | TRMT13 | 54482 | 219130_at | 0.3011 | 0.6816 | |
| GSE77861 | TRMT13 | 54482 | 219130_at | -0.5236 | 0.0425 | |
| SRP007169 | TRMT13 | 54482 | RNAseq | -0.1079 | 0.8052 | |
| SRP008496 | TRMT13 | 54482 | RNAseq | -0.1266 | 0.6426 | |
| SRP064894 | TRMT13 | 54482 | RNAseq | -0.0479 | 0.8546 | |
| SRP133303 | TRMT13 | 54482 | RNAseq | 0.0387 | 0.7994 | |
| SRP159526 | TRMT13 | 54482 | RNAseq | -0.5401 | 0.0711 | |
| SRP193095 | TRMT13 | 54482 | RNAseq | -0.3216 | 0.0009 | |
| SRP219564 | TRMT13 | 54482 | RNAseq | -0.5329 | 0.1709 |
Upregulated datasets: 0; Downregulated datasets: 1.
Survival by TRMT13 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of TRMT13:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | TRMT13 | 54482 | 0 | 10 | 20 | |
| GSE20123 | TRMT13 | 54482 | 0 | 10 | 20 | |
| GSE43470 | TRMT13 | 54482 | 2 | 6 | 35 | |
| GSE46452 | TRMT13 | 54482 | 1 | 1 | 57 | |
| GSE47630 | TRMT13 | 54482 | 9 | 5 | 26 | |
| GSE54993 | TRMT13 | 54482 | 0 | 1 | 69 | |
| GSE54994 | TRMT13 | 54482 | 6 | 3 | 44 | |
| GSE60625 | TRMT13 | 54482 | 0 | 0 | 11 | |
| GSE74703 | TRMT13 | 54482 | 1 | 5 | 30 | |
| GSE74704 | TRMT13 | 54482 | 0 | 6 | 14 | |
| TCGA | TRMT13 | 54482 | 8 | 25 | 63 |
Total number of gains: 27; Total number of losses: 72; Total Number of normals: 389.
Somatic mutations of TRMT13:
Generating mutation plots.
Highly correlated genes for TRMT13:
Showing top 20/201 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| TRMT13 | STT3B | 0.716213 | 3 | 0 | 3 |
| TRMT13 | TCAIM | 0.690463 | 3 | 0 | 3 |
| TRMT13 | NIPSNAP3A | 0.656381 | 3 | 0 | 3 |
| TRMT13 | FKTN | 0.653946 | 4 | 0 | 4 |
| TRMT13 | LACC1 | 0.644432 | 3 | 0 | 3 |
| TRMT13 | SDHD | 0.643122 | 3 | 0 | 3 |
| TRMT13 | GAB1 | 0.638911 | 3 | 0 | 3 |
| TRMT13 | PDIK1L | 0.6386 | 4 | 0 | 3 |
| TRMT13 | LRRK2 | 0.63779 | 3 | 0 | 3 |
| TRMT13 | MGAT4A | 0.634707 | 3 | 0 | 3 |
| TRMT13 | AGL | 0.634596 | 6 | 0 | 6 |
| TRMT13 | IFT74 | 0.631296 | 3 | 0 | 3 |
| TRMT13 | SLC35A3 | 0.628096 | 9 | 0 | 8 |
| TRMT13 | FPGT | 0.62663 | 7 | 0 | 6 |
| TRMT13 | C3orf14 | 0.625318 | 3 | 0 | 3 |
| TRMT13 | FBXL5 | 0.622308 | 4 | 0 | 4 |
| TRMT13 | AHCYL2 | 0.617113 | 5 | 0 | 3 |
| TRMT13 | GABPA | 0.61691 | 5 | 0 | 4 |
| TRMT13 | ZNF626 | 0.615634 | 4 | 0 | 4 |
| TRMT13 | NICN1 | 0.613906 | 3 | 0 | 3 |
For details and further investigation, click here
