| Full name: ubiquitin specific peptidase 47 | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 11p15.3 | ||
| Entrez ID: 55031 | HGNC ID: HGNC:20076 | Ensembl Gene: ENSG00000170242 | OMIM ID: 614460 |
| Drug and gene relationship at DGIdb | |||
Expression of USP47:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | USP47 | 55031 | 221518_s_at | -0.6200 | 0.0359 | |
| GSE20347 | USP47 | 55031 | 221518_s_at | -0.6835 | 0.0015 | |
| GSE23400 | USP47 | 55031 | 221518_s_at | -0.3426 | 0.0000 | |
| GSE26886 | USP47 | 55031 | 221518_s_at | -0.6478 | 0.0035 | |
| GSE29001 | USP47 | 55031 | 221518_s_at | -0.3600 | 0.0489 | |
| GSE38129 | USP47 | 55031 | 221518_s_at | -0.6435 | 0.0000 | |
| GSE45670 | USP47 | 55031 | 221518_s_at | -0.3421 | 0.0008 | |
| GSE53622 | USP47 | 55031 | 19799 | -0.4545 | 0.0000 | |
| GSE53624 | USP47 | 55031 | 19799 | -0.3736 | 0.0000 | |
| GSE63941 | USP47 | 55031 | 221518_s_at | -1.3268 | 0.0026 | |
| GSE77861 | USP47 | 55031 | 221518_s_at | -0.0299 | 0.9391 | |
| GSE97050 | USP47 | 55031 | A_23_P148204 | -0.3990 | 0.1873 | |
| SRP007169 | USP47 | 55031 | RNAseq | 0.3228 | 0.3076 | |
| SRP008496 | USP47 | 55031 | RNAseq | 0.5929 | 0.0109 | |
| SRP064894 | USP47 | 55031 | RNAseq | -0.6313 | 0.0002 | |
| SRP133303 | USP47 | 55031 | RNAseq | 0.1313 | 0.5801 | |
| SRP159526 | USP47 | 55031 | RNAseq | -0.7313 | 0.0006 | |
| SRP193095 | USP47 | 55031 | RNAseq | -0.4553 | 0.0000 | |
| SRP219564 | USP47 | 55031 | RNAseq | -0.1982 | 0.2964 | |
| TCGA | USP47 | 55031 | RNAseq | -0.1646 | 0.0001 |
Upregulated datasets: 0; Downregulated datasets: 1.
Survival by USP47 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of USP47:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | USP47 | 55031 | 0 | 9 | 21 | |
| GSE20123 | USP47 | 55031 | 0 | 9 | 21 | |
| GSE43470 | USP47 | 55031 | 1 | 5 | 37 | |
| GSE46452 | USP47 | 55031 | 7 | 5 | 47 | |
| GSE47630 | USP47 | 55031 | 3 | 11 | 26 | |
| GSE54993 | USP47 | 55031 | 3 | 1 | 66 | |
| GSE54994 | USP47 | 55031 | 4 | 12 | 37 | |
| GSE60625 | USP47 | 55031 | 0 | 0 | 11 | |
| GSE74703 | USP47 | 55031 | 1 | 3 | 32 | |
| GSE74704 | USP47 | 55031 | 0 | 7 | 13 | |
| TCGA | USP47 | 55031 | 11 | 33 | 52 |
Total number of gains: 30; Total number of losses: 95; Total Number of normals: 363.
Somatic mutations of USP47:
Generating mutation plots.
Highly correlated genes for USP47:
Showing top 20/871 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| USP47 | RWDD2B | 0.782622 | 3 | 0 | 3 |
| USP47 | ZNF394 | 0.750104 | 3 | 0 | 3 |
| USP47 | ZNF547 | 0.738696 | 3 | 0 | 3 |
| USP47 | SUFU | 0.728919 | 3 | 0 | 3 |
| USP47 | PDCD7 | 0.728698 | 5 | 0 | 4 |
| USP47 | TMEM132C | 0.72111 | 3 | 0 | 3 |
| USP47 | PDCD4 | 0.718765 | 3 | 0 | 3 |
| USP47 | CLIP4 | 0.699298 | 3 | 0 | 3 |
| USP47 | DSEL | 0.694708 | 3 | 0 | 3 |
| USP47 | RBM20 | 0.694201 | 3 | 0 | 3 |
| USP47 | RPP30 | 0.689637 | 3 | 0 | 3 |
| USP47 | PRDX2 | 0.687745 | 4 | 0 | 3 |
| USP47 | EXOC6B | 0.685804 | 3 | 0 | 3 |
| USP47 | LATS1 | 0.684426 | 3 | 0 | 3 |
| USP47 | LRRC37A2 | 0.684325 | 3 | 0 | 3 |
| USP47 | BLOC1S2 | 0.684229 | 4 | 0 | 3 |
| USP47 | LDHD | 0.684103 | 3 | 0 | 3 |
| USP47 | AMPD3 | 0.682634 | 3 | 0 | 3 |
| USP47 | RASGEF1B | 0.679182 | 4 | 0 | 4 |
| USP47 | NTAN1 | 0.678553 | 3 | 0 | 3 |
For details and further investigation, click here
