| Full name: chromosome 1 open reading frame 56 | Alias Symbol: FLJ20519|MENT | ||
| Type: protein-coding gene | Cytoband: 1q21.3 | ||
| Entrez ID: 54964 | HGNC ID: HGNC:26045 | Ensembl Gene: ENSG00000143443 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of C1orf56:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | C1orf56 | 54964 | 221222_s_at | -0.1700 | 0.7917 | |
| GSE20347 | C1orf56 | 54964 | 221222_s_at | -0.5685 | 0.0016 | |
| GSE23400 | C1orf56 | 54964 | 221222_s_at | -0.1782 | 0.0027 | |
| GSE26886 | C1orf56 | 54964 | 221222_s_at | -0.8378 | 0.0499 | |
| GSE29001 | C1orf56 | 54964 | 221222_s_at | -0.5075 | 0.0274 | |
| GSE38129 | C1orf56 | 54964 | 221222_s_at | -0.3331 | 0.0506 | |
| GSE45670 | C1orf56 | 54964 | 221222_s_at | -0.2215 | 0.1756 | |
| GSE53622 | C1orf56 | 54964 | 149749 | -0.1448 | 0.0952 | |
| GSE53624 | C1orf56 | 54964 | 149749 | 0.0381 | 0.6361 | |
| GSE63941 | C1orf56 | 54964 | 221222_s_at | 2.9956 | 0.0005 | |
| GSE77861 | C1orf56 | 54964 | 221222_s_at | -0.1413 | 0.4856 | |
| GSE97050 | C1orf56 | 54964 | A_24_P234116 | 0.1576 | 0.5631 | |
| SRP007169 | C1orf56 | 54964 | RNAseq | 0.2659 | 0.7094 | |
| SRP064894 | C1orf56 | 54964 | RNAseq | -0.0176 | 0.9601 | |
| SRP133303 | C1orf56 | 54964 | RNAseq | -0.3014 | 0.1942 | |
| SRP159526 | C1orf56 | 54964 | RNAseq | 0.7756 | 0.0150 | |
| SRP193095 | C1orf56 | 54964 | RNAseq | -0.3814 | 0.0003 | |
| SRP219564 | C1orf56 | 54964 | RNAseq | -0.2118 | 0.5173 | |
| TCGA | C1orf56 | 54964 | RNAseq | -0.0503 | 0.5851 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by C1orf56 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of C1orf56:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | C1orf56 | 54964 | 14 | 0 | 16 | |
| GSE20123 | C1orf56 | 54964 | 14 | 0 | 16 | |
| GSE43470 | C1orf56 | 54964 | 6 | 1 | 36 | |
| GSE46452 | C1orf56 | 54964 | 2 | 1 | 56 | |
| GSE47630 | C1orf56 | 54964 | 14 | 0 | 26 | |
| GSE54993 | C1orf56 | 54964 | 0 | 4 | 66 | |
| GSE54994 | C1orf56 | 54964 | 15 | 0 | 38 | |
| GSE60625 | C1orf56 | 54964 | 0 | 0 | 11 | |
| GSE74703 | C1orf56 | 54964 | 6 | 1 | 29 | |
| GSE74704 | C1orf56 | 54964 | 7 | 0 | 13 | |
| TCGA | C1orf56 | 54964 | 37 | 2 | 57 |
Total number of gains: 115; Total number of losses: 9; Total Number of normals: 364.
Somatic mutations of C1orf56:
Generating mutation plots.
Highly correlated genes for C1orf56:
Showing top 20/629 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| C1orf56 | RPS27A | 0.817388 | 3 | 0 | 3 |
| C1orf56 | RNF135 | 0.795196 | 3 | 0 | 3 |
| C1orf56 | SEC61B | 0.788065 | 3 | 0 | 3 |
| C1orf56 | SPRYD4 | 0.762554 | 3 | 0 | 3 |
| C1orf56 | MRRF | 0.754302 | 4 | 0 | 4 |
| C1orf56 | TTC39B | 0.745542 | 3 | 0 | 3 |
| C1orf56 | USP10 | 0.744795 | 3 | 0 | 3 |
| C1orf56 | KRT18 | 0.744603 | 3 | 0 | 3 |
| C1orf56 | RNPC3 | 0.74304 | 3 | 0 | 3 |
| C1orf56 | ZNF292 | 0.735115 | 3 | 0 | 3 |
| C1orf56 | TET2 | 0.731602 | 5 | 0 | 5 |
| C1orf56 | SLC25A39 | 0.728803 | 3 | 0 | 3 |
| C1orf56 | ZDHHC5 | 0.728425 | 4 | 0 | 3 |
| C1orf56 | RBX1 | 0.725487 | 3 | 0 | 3 |
| C1orf56 | KCTD18 | 0.722616 | 3 | 0 | 3 |
| C1orf56 | RAB18 | 0.722546 | 3 | 0 | 3 |
| C1orf56 | PEX2 | 0.720456 | 3 | 0 | 3 |
| C1orf56 | RSRC2 | 0.72033 | 3 | 0 | 3 |
| C1orf56 | ALDH7A1 | 0.720252 | 3 | 0 | 3 |
| C1orf56 | AIMP1 | 0.718116 | 3 | 0 | 3 |
For details and further investigation, click here
