| Full name: chromosome 9 open reading frame 40 | Alias Symbol: FLJ10110 | ||
| Type: protein-coding gene | Cytoband: 9q21.13 | ||
| Entrez ID: 55071 | HGNC ID: HGNC:23433 | Ensembl Gene: ENSG00000135045 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of C9orf40:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | C9orf40 | 55071 | 222781_s_at | 0.0445 | 0.9295 | |
| GSE20347 | C9orf40 | 55071 | 218904_s_at | 0.0242 | 0.8319 | |
| GSE23400 | C9orf40 | 55071 | 218904_s_at | 0.0395 | 0.2249 | |
| GSE26886 | C9orf40 | 55071 | 222781_s_at | 0.1221 | 0.6704 | |
| GSE29001 | C9orf40 | 55071 | 218904_s_at | 0.8443 | 0.0081 | |
| GSE38129 | C9orf40 | 55071 | 218904_s_at | 0.0558 | 0.5767 | |
| GSE45670 | C9orf40 | 55071 | 222781_s_at | 0.4007 | 0.0412 | |
| GSE53622 | C9orf40 | 55071 | 31794 | 0.0304 | 0.8475 | |
| GSE53624 | C9orf40 | 55071 | 31794 | 0.8080 | 0.0000 | |
| GSE63941 | C9orf40 | 55071 | 222781_s_at | 0.9467 | 0.1707 | |
| GSE77861 | C9orf40 | 55071 | 222781_s_at | -0.0558 | 0.7763 | |
| GSE97050 | C9orf40 | 55071 | A_24_P43876 | 0.0785 | 0.7903 | |
| SRP007169 | C9orf40 | 55071 | RNAseq | 0.2946 | 0.6719 | |
| SRP064894 | C9orf40 | 55071 | RNAseq | 1.3133 | 0.0002 | |
| SRP133303 | C9orf40 | 55071 | RNAseq | 0.1979 | 0.2852 | |
| SRP159526 | C9orf40 | 55071 | RNAseq | 0.5293 | 0.2040 | |
| SRP193095 | C9orf40 | 55071 | RNAseq | 0.0664 | 0.6144 | |
| SRP219564 | C9orf40 | 55071 | RNAseq | -0.2420 | 0.5563 | |
| TCGA | C9orf40 | 55071 | RNAseq | 0.3020 | 0.0026 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by C9orf40 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of C9orf40:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | C9orf40 | 55071 | 6 | 10 | 14 | |
| GSE20123 | C9orf40 | 55071 | 6 | 10 | 14 | |
| GSE43470 | C9orf40 | 55071 | 6 | 5 | 32 | |
| GSE46452 | C9orf40 | 55071 | 6 | 14 | 39 | |
| GSE47630 | C9orf40 | 55071 | 1 | 18 | 21 | |
| GSE54993 | C9orf40 | 55071 | 4 | 1 | 65 | |
| GSE54994 | C9orf40 | 55071 | 4 | 13 | 36 | |
| GSE60625 | C9orf40 | 55071 | 0 | 0 | 11 | |
| GSE74703 | C9orf40 | 55071 | 5 | 4 | 27 | |
| GSE74704 | C9orf40 | 55071 | 3 | 7 | 10 | |
| TCGA | C9orf40 | 55071 | 20 | 28 | 48 |
Total number of gains: 61; Total number of losses: 110; Total Number of normals: 317.
Somatic mutations of C9orf40:
Generating mutation plots.
Highly correlated genes for C9orf40:
Showing top 20/305 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| C9orf40 | PTPMT1 | 0.709888 | 3 | 0 | 3 |
| C9orf40 | EAF1 | 0.701576 | 3 | 0 | 3 |
| C9orf40 | FUBP1 | 0.697508 | 3 | 0 | 3 |
| C9orf40 | NOSIP | 0.693488 | 3 | 0 | 3 |
| C9orf40 | TRPM7 | 0.692029 | 3 | 0 | 3 |
| C9orf40 | FXR1 | 0.690867 | 3 | 0 | 3 |
| C9orf40 | HDDC3 | 0.690503 | 3 | 0 | 3 |
| C9orf40 | CHUK | 0.681272 | 3 | 0 | 3 |
| C9orf40 | GMPS | 0.677802 | 5 | 0 | 4 |
| C9orf40 | GTDC1 | 0.672465 | 3 | 0 | 3 |
| C9orf40 | NXT2 | 0.666621 | 3 | 0 | 3 |
| C9orf40 | BTBD6 | 0.663316 | 4 | 0 | 3 |
| C9orf40 | USP40 | 0.657488 | 3 | 0 | 3 |
| C9orf40 | SETD3 | 0.65731 | 3 | 0 | 3 |
| C9orf40 | LAMTOR1 | 0.655017 | 3 | 0 | 3 |
| C9orf40 | H6PD | 0.654515 | 3 | 0 | 3 |
| C9orf40 | TMED8 | 0.654331 | 3 | 0 | 3 |
| C9orf40 | SPCS2 | 0.653403 | 4 | 0 | 3 |
| C9orf40 | CCL28 | 0.651984 | 3 | 0 | 3 |
| C9orf40 | STEAP1B | 0.647024 | 3 | 0 | 3 |
For details and further investigation, click here
