| Full name: collagen beta(1-O)galactosyltransferase 1 | Alias Symbol: FLJ22329 | ||
| Type: protein-coding gene | Cytoband: 19p13.11 | ||
| Entrez ID: 79709 | HGNC ID: HGNC:26182 | Ensembl Gene: ENSG00000130309 | OMIM ID: 617531 |
| Drug and gene relationship at DGIdb | |||
Expression of COLGALT1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | COLGALT1 | 79709 | 218473_s_at | 0.9231 | 0.0083 | |
| GSE20347 | COLGALT1 | 79709 | 218473_s_at | 0.7850 | 0.0000 | |
| GSE23400 | COLGALT1 | 79709 | 218473_s_at | 0.6471 | 0.0000 | |
| GSE26886 | COLGALT1 | 79709 | 218473_s_at | 1.2030 | 0.0000 | |
| GSE29001 | COLGALT1 | 79709 | 218473_s_at | 0.9966 | 0.0014 | |
| GSE38129 | COLGALT1 | 79709 | 218473_s_at | 0.7858 | 0.0000 | |
| GSE45670 | COLGALT1 | 79709 | 218473_s_at | 0.8501 | 0.0000 | |
| GSE53622 | COLGALT1 | 79709 | 47184 | 1.2914 | 0.0000 | |
| GSE53624 | COLGALT1 | 79709 | 47184 | 1.6485 | 0.0000 | |
| GSE63941 | COLGALT1 | 79709 | 218473_s_at | -0.1917 | 0.4972 | |
| GSE77861 | COLGALT1 | 79709 | 218473_s_at | 0.7660 | 0.0007 | |
| SRP007169 | COLGALT1 | 79709 | RNAseq | 2.3095 | 0.0000 | |
| SRP008496 | COLGALT1 | 79709 | RNAseq | 2.3421 | 0.0000 | |
| SRP064894 | COLGALT1 | 79709 | RNAseq | 1.8797 | 0.0000 | |
| SRP133303 | COLGALT1 | 79709 | RNAseq | 1.4481 | 0.0000 | |
| SRP159526 | COLGALT1 | 79709 | RNAseq | 1.1395 | 0.0000 | |
| SRP193095 | COLGALT1 | 79709 | RNAseq | 1.4173 | 0.0000 | |
| SRP219564 | COLGALT1 | 79709 | RNAseq | 1.2223 | 0.0023 |
Upregulated datasets: 10; Downregulated datasets: 0.
Survival by COLGALT1 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of COLGALT1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | COLGALT1 | 79709 | 4 | 4 | 22 | |
| GSE20123 | COLGALT1 | 79709 | 3 | 2 | 25 | |
| GSE43470 | COLGALT1 | 79709 | 2 | 6 | 35 | |
| GSE46452 | COLGALT1 | 79709 | 47 | 1 | 11 | |
| GSE47630 | COLGALT1 | 79709 | 4 | 8 | 28 | |
| GSE54993 | COLGALT1 | 79709 | 15 | 4 | 51 | |
| GSE54994 | COLGALT1 | 79709 | 6 | 14 | 33 | |
| GSE60625 | COLGALT1 | 79709 | 9 | 0 | 2 | |
| GSE74703 | COLGALT1 | 79709 | 2 | 4 | 30 | |
| GSE74704 | COLGALT1 | 79709 | 0 | 2 | 18 | |
| TCGA | COLGALT1 | 79709 | 17 | 9 | 70 |
Total number of gains: 109; Total number of losses: 54; Total Number of normals: 325.
Somatic mutations of COLGALT1:
Generating mutation plots.
Highly correlated genes for COLGALT1:
Showing top 20/2110 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| COLGALT1 | CD276 | 0.857627 | 4 | 0 | 4 |
| COLGALT1 | DNMT1 | 0.840037 | 10 | 0 | 10 |
| COLGALT1 | CMSS1 | 0.833597 | 6 | 0 | 6 |
| COLGALT1 | PLAU | 0.820536 | 10 | 0 | 10 |
| COLGALT1 | CTHRC1 | 0.810819 | 6 | 0 | 6 |
| COLGALT1 | SERPINH1 | 0.80846 | 10 | 0 | 10 |
| COLGALT1 | TNFAIP8L1 | 0.80742 | 4 | 0 | 4 |
| COLGALT1 | MYBL2 | 0.80565 | 10 | 0 | 10 |
| COLGALT1 | UBE2T | 0.803903 | 6 | 0 | 6 |
| COLGALT1 | WDR66 | 0.80118 | 6 | 0 | 6 |
| COLGALT1 | LPCAT1 | 0.799878 | 10 | 0 | 10 |
| COLGALT1 | UHRF1 | 0.798197 | 6 | 0 | 6 |
| COLGALT1 | PLXNA1 | 0.796327 | 10 | 0 | 10 |
| COLGALT1 | HOMER3 | 0.794905 | 11 | 0 | 11 |
| COLGALT1 | MFAP2 | 0.790659 | 10 | 0 | 10 |
| COLGALT1 | TMEM184B | 0.789353 | 10 | 0 | 10 |
| COLGALT1 | SLC39A3 | 0.783902 | 3 | 0 | 3 |
| COLGALT1 | SLC5A12 | 0.780539 | 3 | 0 | 3 |
| COLGALT1 | ACVR1C | 0.779995 | 4 | 0 | 4 |
| COLGALT1 | UBE2C | 0.775589 | 10 | 0 | 10 |
For details and further investigation, click here
