| Full name: homeobox C6 | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 12q13.13 | ||
| Entrez ID: 3223 | HGNC ID: HGNC:5128 | Ensembl Gene: ENSG00000197757 | OMIM ID: 142972 |
Expression of HOXC6:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | HOXC6 | 3223 | 206858_s_at | 0.6122 | 0.2643 | |
| GSE20347 | HOXC6 | 3223 | 206858_s_at | 0.6713 | 0.1362 | |
| GSE23400 | HOXC6 | 3223 | 206858_s_at | 0.8318 | 0.0000 | |
| GSE26886 | HOXC6 | 3223 | 206858_s_at | 0.6487 | 0.1638 | |
| GSE29001 | HOXC6 | 3223 | 206858_s_at | 0.8225 | 0.2332 | |
| GSE38129 | HOXC6 | 3223 | 206858_s_at | 1.0885 | 0.0030 | |
| GSE45670 | HOXC6 | 3223 | 206858_s_at | 1.2884 | 0.0006 | |
| GSE53622 | HOXC6 | 3223 | 11253 | 0.5585 | 0.0001 | |
| GSE53624 | HOXC6 | 3223 | 11253 | 0.6592 | 0.0000 | |
| GSE63941 | HOXC6 | 3223 | 206858_s_at | 2.5643 | 0.0128 | |
| GSE77861 | HOXC6 | 3223 | 206858_s_at | 0.6484 | 0.0451 | |
| GSE97050 | HOXC6 | 3223 | A_33_P3300965 | -0.1060 | 0.8910 | |
| SRP133303 | HOXC6 | 3223 | RNAseq | 0.8430 | 0.0322 | |
| SRP159526 | HOXC6 | 3223 | RNAseq | 2.5478 | 0.0005 | |
| SRP219564 | HOXC6 | 3223 | RNAseq | 1.5913 | 0.0098 | |
| TCGA | HOXC6 | 3223 | RNAseq | 1.7771 | 0.0000 |
Upregulated datasets: 6; Downregulated datasets: 0.
Survival by HOXC6 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of HOXC6:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | HOXC6 | 3223 | 4 | 1 | 25 | |
| GSE20123 | HOXC6 | 3223 | 4 | 1 | 25 | |
| GSE43470 | HOXC6 | 3223 | 3 | 0 | 40 | |
| GSE46452 | HOXC6 | 3223 | 7 | 1 | 51 | |
| GSE47630 | HOXC6 | 3223 | 10 | 2 | 28 | |
| GSE54993 | HOXC6 | 3223 | 0 | 5 | 65 | |
| GSE54994 | HOXC6 | 3223 | 4 | 1 | 48 | |
| GSE60625 | HOXC6 | 3223 | 0 | 0 | 11 | |
| GSE74703 | HOXC6 | 3223 | 3 | 0 | 33 | |
| GSE74704 | HOXC6 | 3223 | 3 | 1 | 16 | |
| TCGA | HOXC6 | 3223 | 15 | 11 | 70 |
Total number of gains: 53; Total number of losses: 23; Total Number of normals: 412.
Somatic mutations of HOXC6:
Generating mutation plots.
Highly correlated genes for HOXC6:
Showing top 20/238 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| HOXC6 | AMDHD1 | 0.714752 | 3 | 0 | 3 |
| HOXC6 | WDR75 | 0.687321 | 3 | 0 | 3 |
| HOXC6 | HOXC9 | 0.684496 | 6 | 0 | 6 |
| HOXC6 | DPH7 | 0.676877 | 3 | 0 | 3 |
| HOXC6 | SMYD2 | 0.670321 | 4 | 0 | 3 |
| HOXC6 | CCDC127 | 0.666655 | 3 | 0 | 3 |
| HOXC6 | CCM2 | 0.661828 | 3 | 0 | 3 |
| HOXC6 | RUNX1-IT1 | 0.643417 | 5 | 0 | 4 |
| HOXC6 | FMNL2 | 0.643341 | 4 | 0 | 3 |
| HOXC6 | GALNT6 | 0.641483 | 5 | 0 | 3 |
| HOXC6 | ERH | 0.635066 | 5 | 0 | 4 |
| HOXC6 | ACVR1C | 0.631349 | 4 | 0 | 3 |
| HOXC6 | HOXC10 | 0.630228 | 11 | 0 | 9 |
| HOXC6 | PIEZO1 | 0.628979 | 3 | 0 | 3 |
| HOXC6 | PLOD2 | 0.628018 | 4 | 0 | 4 |
| HOXC6 | HNRNPU | 0.618722 | 4 | 0 | 3 |
| HOXC6 | ARFGAP1 | 0.611466 | 4 | 0 | 3 |
| HOXC6 | IRX2 | 0.607969 | 6 | 0 | 3 |
| HOXC6 | TONSL | 0.603453 | 6 | 0 | 3 |
| HOXC6 | CACTIN | 0.603254 | 4 | 0 | 3 |
For details and further investigation, click here
