| Full name: long intergenic non-protein coding RNA 242 | Alias Symbol: FLJ31451|dJ266L20.5 | ||
| Type: non-coding RNA | Cytoband: 6q27 | ||
| Entrez ID: 401288 | HGNC ID: HGNC:21249 | Ensembl Gene: ENSG00000229214 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00242:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00242 | 401288 | 1561327_at | 0.0246 | 0.9569 | |
| GSE26886 | LINC00242 | 401288 | 1561327_at | 0.2511 | 0.0956 | |
| GSE45670 | LINC00242 | 401288 | 1561327_at | 0.0172 | 0.8967 | |
| GSE53622 | LINC00242 | 401288 | 87244 | -0.5751 | 0.0023 | |
| GSE53624 | LINC00242 | 401288 | 87244 | 0.0340 | 0.8819 | |
| GSE63941 | LINC00242 | 401288 | 1561327_at | -0.4781 | 0.0366 | |
| GSE77861 | LINC00242 | 401288 | 1561327_at | -0.0921 | 0.4807 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00242 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00242:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00242 | 401288 | 4 | 6 | 20 | |
| GSE20123 | LINC00242 | 401288 | 4 | 6 | 20 | |
| GSE43470 | LINC00242 | 401288 | 2 | 0 | 41 | |
| GSE46452 | LINC00242 | 401288 | 3 | 10 | 46 | |
| GSE47630 | LINC00242 | 401288 | 7 | 7 | 26 | |
| GSE54993 | LINC00242 | 401288 | 4 | 3 | 63 | |
| GSE54994 | LINC00242 | 401288 | 10 | 8 | 35 | |
| GSE60625 | LINC00242 | 401288 | 1 | 1 | 9 | |
| GSE74703 | LINC00242 | 401288 | 2 | 0 | 34 | |
| GSE74704 | LINC00242 | 401288 | 2 | 3 | 15 | |
| TCGA | LINC00242 | 401288 | 14 | 20 | 62 |
Total number of gains: 53; Total number of losses: 64; Total Number of normals: 371.
Somatic mutations of LINC00242:
Generating mutation plots.
Highly correlated genes for LINC00242:
Showing top 20/54 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00242 | ARHGAP20 | 0.620353 | 4 | 0 | 4 |
| LINC00242 | STAT5A | 0.616638 | 3 | 0 | 3 |
| LINC00242 | COPS8 | 0.608151 | 3 | 0 | 3 |
| LINC00242 | PDE4DIP | 0.606107 | 4 | 0 | 3 |
| LINC00242 | RMDN2 | 0.604871 | 3 | 0 | 3 |
| LINC00242 | MRAS | 0.600091 | 4 | 0 | 4 |
| LINC00242 | CPQ | 0.596176 | 4 | 0 | 4 |
| LINC00242 | PRPH2 | 0.592146 | 3 | 0 | 3 |
| LINC00242 | PAGE5 | 0.591227 | 3 | 0 | 3 |
| LINC00242 | CNPY4 | 0.590192 | 3 | 0 | 3 |
| LINC00242 | COLEC12 | 0.588935 | 3 | 0 | 3 |
| LINC00242 | PDE7B | 0.587862 | 3 | 0 | 3 |
| LINC00242 | CYS1 | 0.585359 | 3 | 0 | 3 |
| LINC00242 | PLCL1 | 0.575729 | 5 | 0 | 4 |
| LINC00242 | ATOH8 | 0.570525 | 3 | 0 | 3 |
| LINC00242 | DACT3 | 0.567681 | 3 | 0 | 3 |
| LINC00242 | KCNE4 | 0.565002 | 4 | 0 | 3 |
| LINC00242 | FGF7 | 0.563244 | 3 | 0 | 3 |
| LINC00242 | NCAM2 | 0.562512 | 5 | 0 | 4 |
| LINC00242 | TCF21 | 0.560475 | 3 | 0 | 3 |
For details and further investigation, click here
