| Full name: long intergenic non-protein coding RNA 551 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 13q33.3 | ||
| Entrez ID: 283483 | HGNC ID: HGNC:43691 | Ensembl Gene: ENSG00000272274 | OMIM ID: |
Expression of LINC00551:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00551 | 283483 | 244119_at | -0.4901 | 0.2143 | |
| GSE26886 | LINC00551 | 283483 | 244119_at | -1.0313 | 0.0003 | |
| GSE45670 | LINC00551 | 283483 | 244119_at | -0.9811 | 0.0228 | |
| GSE53622 | LINC00551 | 283483 | 106340 | -0.5689 | 0.0000 | |
| GSE53624 | LINC00551 | 283483 | 106340 | -0.6209 | 0.0000 | |
| GSE63941 | LINC00551 | 283483 | 244119_at | 0.0599 | 0.7115 | |
| GSE77861 | LINC00551 | 283483 | 244119_at | -0.5334 | 0.0058 | |
| SRP064894 | LINC00551 | 283483 | RNAseq | -5.7534 | 0.0000 | |
| SRP133303 | LINC00551 | 283483 | RNAseq | -6.2876 | 0.0000 | |
| SRP159526 | LINC00551 | 283483 | RNAseq | -5.5033 | 0.0000 |
Upregulated datasets: 0; Downregulated datasets: 4.
Survival by LINC00551 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00551:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00551 | 283483 | 6 | 10 | 14 | |
| GSE20123 | LINC00551 | 283483 | 6 | 9 | 15 | |
| GSE43470 | LINC00551 | 283483 | 4 | 11 | 28 | |
| GSE46452 | LINC00551 | 283483 | 1 | 31 | 27 | |
| GSE47630 | LINC00551 | 283483 | 3 | 26 | 11 | |
| GSE54993 | LINC00551 | 283483 | 11 | 4 | 55 | |
| GSE54994 | LINC00551 | 283483 | 7 | 8 | 38 | |
| GSE60625 | LINC00551 | 283483 | 0 | 3 | 8 | |
| GSE74703 | LINC00551 | 283483 | 3 | 9 | 24 | |
| GSE74704 | LINC00551 | 283483 | 4 | 9 | 7 | |
| TCGA | LINC00551 | 283483 | 16 | 34 | 46 |
Total number of gains: 61; Total number of losses: 154; Total Number of normals: 273.
Somatic mutations of LINC00551:
Generating mutation plots.
Highly correlated genes for LINC00551:
Showing top 20/979 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00551 | SFTA2 | 0.78134 | 4 | 0 | 4 |
| LINC00551 | CD2AP | 0.777856 | 3 | 0 | 3 |
| LINC00551 | KATNBL1 | 0.770995 | 4 | 0 | 4 |
| LINC00551 | PADI1 | 0.770453 | 4 | 0 | 4 |
| LINC00551 | SPNS2 | 0.762747 | 4 | 0 | 4 |
| LINC00551 | SLC46A2 | 0.759373 | 5 | 0 | 4 |
| LINC00551 | PLEKHA7 | 0.759268 | 4 | 0 | 4 |
| LINC00551 | SAMD5 | 0.754211 | 5 | 0 | 5 |
| LINC00551 | ATP6V1C2 | 0.75308 | 4 | 0 | 4 |
| LINC00551 | CES2 | 0.74341 | 4 | 0 | 4 |
| LINC00551 | STX12 | 0.740602 | 4 | 0 | 4 |
| LINC00551 | CYP2J2 | 0.737527 | 5 | 0 | 4 |
| LINC00551 | AIF1L | 0.736719 | 6 | 0 | 6 |
| LINC00551 | EPB41L4A | 0.735645 | 4 | 0 | 4 |
| LINC00551 | STRADB | 0.734338 | 5 | 0 | 5 |
| LINC00551 | PSCA | 0.733404 | 4 | 0 | 4 |
| LINC00551 | DLG2 | 0.733278 | 4 | 0 | 4 |
| LINC00551 | ZNRF1 | 0.731158 | 4 | 0 | 4 |
| LINC00551 | ACAA1 | 0.731075 | 4 | 0 | 4 |
| LINC00551 | CPA4 | 0.728748 | 3 | 0 | 3 |
For details and further investigation, click here
