| Full name: long intergenic non-protein coding RNA 623 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 1p11.2 | ||
| Entrez ID: 728855 | HGNC ID: HGNC:44252 | Ensembl Gene: ENSG00000226067 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00623:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00623 | 728855 | 229429_x_at | 0.0574 | 0.9461 | |
| GSE26886 | LINC00623 | 728855 | 229429_x_at | 0.4757 | 0.0950 | |
| GSE45670 | LINC00623 | 728855 | 229429_x_at | -0.0809 | 0.7091 | |
| GSE53622 | LINC00623 | 728855 | 24051 | 0.0212 | 0.8832 | |
| GSE53624 | LINC00623 | 728855 | 24051 | 0.1210 | 0.1978 | |
| GSE63941 | LINC00623 | 728855 | 229429_x_at | 0.1867 | 0.8343 | |
| GSE77861 | LINC00623 | 728855 | 229429_x_at | -0.2685 | 0.3151 | |
| SRP064894 | LINC00623 | 728855 | RNAseq | 0.4254 | 0.1291 | |
| SRP133303 | LINC00623 | 728855 | RNAseq | 0.1164 | 0.4381 | |
| SRP159526 | LINC00623 | 728855 | RNAseq | -0.3564 | 0.5043 | |
| SRP193095 | LINC00623 | 728855 | RNAseq | 0.1379 | 0.3549 | |
| SRP219564 | LINC00623 | 728855 | RNAseq | 0.4370 | 0.2719 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00623 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00623:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00623 | 728855 | 13 | 1 | 16 | |
| GSE20123 | LINC00623 | 728855 | 13 | 1 | 16 | |
| GSE43470 | LINC00623 | 728855 | 6 | 2 | 35 | |
| GSE46452 | LINC00623 | 728855 | 2 | 1 | 56 | |
| GSE47630 | LINC00623 | 728855 | 14 | 2 | 24 | |
| GSE54993 | LINC00623 | 728855 | 0 | 3 | 67 | |
| GSE54994 | LINC00623 | 728855 | 15 | 0 | 38 | |
| GSE60625 | LINC00623 | 728855 | 0 | 0 | 11 | |
| GSE74703 | LINC00623 | 728855 | 6 | 2 | 28 | |
| GSE74704 | LINC00623 | 728855 | 6 | 1 | 13 | |
| TCGA | LINC00623 | 728855 | 33 | 15 | 48 |
Total number of gains: 108; Total number of losses: 28; Total Number of normals: 352.
Somatic mutations of LINC00623:
Generating mutation plots.
Highly correlated genes for LINC00623:
Showing top 20/28 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00623 | TRIM8 | 0.696827 | 4 | 0 | 3 |
| LINC00623 | FBXO6 | 0.686629 | 3 | 0 | 3 |
| LINC00623 | USP48 | 0.682878 | 3 | 0 | 3 |
| LINC00623 | HP1BP3 | 0.668965 | 3 | 0 | 3 |
| LINC00623 | MR1 | 0.663885 | 3 | 0 | 3 |
| LINC00623 | RNASEH2B | 0.655977 | 3 | 0 | 3 |
| LINC00623 | DCP1B | 0.6497 | 3 | 0 | 3 |
| LINC00623 | HMGN2 | 0.640972 | 3 | 0 | 3 |
| LINC00623 | SLC25A29 | 0.632397 | 3 | 0 | 3 |
| LINC00623 | ZNF518B | 0.606594 | 3 | 0 | 3 |
| LINC00623 | GPAT2 | 0.603576 | 3 | 0 | 3 |
| LINC00623 | HYI | 0.598293 | 4 | 0 | 3 |
| LINC00623 | ACSF2 | 0.591165 | 4 | 0 | 3 |
| LINC00623 | ACP6 | 0.579304 | 4 | 0 | 3 |
| LINC00623 | TNRC18 | 0.551091 | 3 | 0 | 3 |
| LINC00623 | GAS6 | 0.550402 | 4 | 0 | 3 |
| LINC00623 | PCDH7 | 0.542424 | 5 | 0 | 3 |
| LINC00623 | THBS4 | 0.541551 | 4 | 0 | 3 |
| LINC00623 | VPS45 | 0.540055 | 4 | 0 | 3 |
| LINC00623 | FAM193B | 0.534555 | 3 | 0 | 3 |
For details and further investigation, click here
