| Full name: piggyBac transposable element derived 4 | Alias Symbol: FLJ32638|FLJ37497 | ||
| Type: protein-coding gene | Cytoband: 15q14 | ||
| Entrez ID: 161779 | HGNC ID: HGNC:19401 | Ensembl Gene: ENSG00000182405 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of PGBD4:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | PGBD4 | 161779 | 243815_at | -0.0446 | 0.8796 | |
| GSE26886 | PGBD4 | 161779 | 243815_at | 0.0394 | 0.8632 | |
| GSE45670 | PGBD4 | 161779 | 243815_at | 0.2929 | 0.0935 | |
| GSE53622 | PGBD4 | 161779 | 105712 | -0.0009 | 0.9910 | |
| GSE53624 | PGBD4 | 161779 | 105712 | 0.1871 | 0.0096 | |
| GSE63941 | PGBD4 | 161779 | 243815_at | -0.7118 | 0.0339 | |
| GSE77861 | PGBD4 | 161779 | 243815_at | -0.0655 | 0.6072 | |
| GSE97050 | PGBD4 | 161779 | A_23_P420334 | 0.0975 | 0.7658 | |
| SRP007169 | PGBD4 | 161779 | RNAseq | -0.1350 | 0.7827 | |
| SRP008496 | PGBD4 | 161779 | RNAseq | -0.4842 | 0.1659 | |
| SRP064894 | PGBD4 | 161779 | RNAseq | 0.1205 | 0.5547 | |
| SRP133303 | PGBD4 | 161779 | RNAseq | 0.0845 | 0.4749 | |
| SRP159526 | PGBD4 | 161779 | RNAseq | 1.4896 | 0.0012 | |
| SRP193095 | PGBD4 | 161779 | RNAseq | 0.2172 | 0.0658 | |
| SRP219564 | PGBD4 | 161779 | RNAseq | 0.2918 | 0.3282 | |
| TCGA | PGBD4 | 161779 | RNAseq | -0.1768 | 0.0935 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by PGBD4 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of PGBD4:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | PGBD4 | 161779 | 3 | 6 | 21 | |
| GSE20123 | PGBD4 | 161779 | 3 | 6 | 21 | |
| GSE43470 | PGBD4 | 161779 | 4 | 4 | 35 | |
| GSE46452 | PGBD4 | 161779 | 3 | 7 | 49 | |
| GSE47630 | PGBD4 | 161779 | 8 | 11 | 21 | |
| GSE54993 | PGBD4 | 161779 | 4 | 6 | 60 | |
| GSE54994 | PGBD4 | 161779 | 5 | 8 | 40 | |
| GSE60625 | PGBD4 | 161779 | 4 | 0 | 7 | |
| GSE74703 | PGBD4 | 161779 | 4 | 3 | 29 | |
| GSE74704 | PGBD4 | 161779 | 2 | 5 | 13 | |
| TCGA | PGBD4 | 161779 | 13 | 17 | 66 |
Total number of gains: 53; Total number of losses: 73; Total Number of normals: 362.
Somatic mutations of PGBD4:
Generating mutation plots.
Highly correlated genes for PGBD4:
Showing top 20/51 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| PGBD4 | LIPT1 | 0.789143 | 3 | 0 | 3 |
| PGBD4 | USP38 | 0.717038 | 3 | 0 | 3 |
| PGBD4 | ZNF225 | 0.716266 | 3 | 0 | 3 |
| PGBD4 | WDFY1 | 0.713907 | 3 | 0 | 3 |
| PGBD4 | CREB3L2 | 0.701759 | 3 | 0 | 3 |
| PGBD4 | HIVEP1 | 0.683847 | 3 | 0 | 3 |
| PGBD4 | TBC1D19 | 0.682848 | 3 | 0 | 3 |
| PGBD4 | HMG20A | 0.679896 | 3 | 0 | 3 |
| PGBD4 | SEC24B | 0.673152 | 3 | 0 | 3 |
| PGBD4 | ATG4C | 0.67199 | 3 | 0 | 3 |
| PGBD4 | CUL3 | 0.670326 | 3 | 0 | 3 |
| PGBD4 | GTF3C4 | 0.661017 | 3 | 0 | 3 |
| PGBD4 | GLIS3 | 0.659318 | 3 | 0 | 3 |
| PGBD4 | CREB3L1 | 0.656588 | 3 | 0 | 3 |
| PGBD4 | TLE4 | 0.655553 | 3 | 0 | 3 |
| PGBD4 | STT3B | 0.654523 | 3 | 0 | 3 |
| PGBD4 | YIPF3 | 0.653421 | 3 | 0 | 3 |
| PGBD4 | ATL1 | 0.651147 | 3 | 0 | 3 |
| PGBD4 | ACSS3 | 0.650017 | 5 | 0 | 4 |
| PGBD4 | DTWD1 | 0.648591 | 4 | 0 | 3 |
For details and further investigation, click here
