| Full name: pre-mRNA processing factor 38B | Alias Symbol: FLJ10330|NET1 | ||
| Type: protein-coding gene | Cytoband: 1p13.3 | ||
| Entrez ID: 55119 | HGNC ID: HGNC:25512 | Ensembl Gene: ENSG00000134186 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of PRPF38B:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | PRPF38B | 55119 | 218040_at | -0.0409 | 0.8879 | |
| GSE20347 | PRPF38B | 55119 | 218040_at | -0.2215 | 0.0394 | |
| GSE23400 | PRPF38B | 55119 | 218040_at | -0.0429 | 0.4116 | |
| GSE26886 | PRPF38B | 55119 | 218040_at | -0.7061 | 0.0004 | |
| GSE29001 | PRPF38B | 55119 | 218040_at | 0.1426 | 0.3076 | |
| GSE38129 | PRPF38B | 55119 | 218040_at | -0.0797 | 0.4219 | |
| GSE45670 | PRPF38B | 55119 | 218040_at | 0.0237 | 0.8789 | |
| GSE53622 | PRPF38B | 55119 | 122825 | 0.1987 | 0.0001 | |
| GSE53624 | PRPF38B | 55119 | 122825 | 0.2253 | 0.0001 | |
| GSE63941 | PRPF38B | 55119 | 218040_at | -0.2597 | 0.5768 | |
| GSE77861 | PRPF38B | 55119 | 218040_at | -0.2192 | 0.3093 | |
| GSE97050 | PRPF38B | 55119 | A_33_P3329834 | 0.2803 | 0.3891 | |
| SRP007169 | PRPF38B | 55119 | RNAseq | 1.0077 | 0.0185 | |
| SRP008496 | PRPF38B | 55119 | RNAseq | 1.0372 | 0.0016 | |
| SRP064894 | PRPF38B | 55119 | RNAseq | 0.1838 | 0.3695 | |
| SRP133303 | PRPF38B | 55119 | RNAseq | 0.0500 | 0.6444 | |
| SRP159526 | PRPF38B | 55119 | RNAseq | -0.4120 | 0.1169 | |
| SRP193095 | PRPF38B | 55119 | RNAseq | -0.0588 | 0.6139 | |
| SRP219564 | PRPF38B | 55119 | RNAseq | -0.1315 | 0.6485 | |
| TCGA | PRPF38B | 55119 | RNAseq | -0.0839 | 0.0843 |
Upregulated datasets: 2; Downregulated datasets: 0.
Survival by PRPF38B expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of PRPF38B:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | PRPF38B | 55119 | 0 | 12 | 18 | |
| GSE20123 | PRPF38B | 55119 | 0 | 11 | 19 | |
| GSE43470 | PRPF38B | 55119 | 0 | 8 | 35 | |
| GSE46452 | PRPF38B | 55119 | 2 | 1 | 56 | |
| GSE47630 | PRPF38B | 55119 | 9 | 5 | 26 | |
| GSE54993 | PRPF38B | 55119 | 0 | 1 | 69 | |
| GSE54994 | PRPF38B | 55119 | 7 | 4 | 42 | |
| GSE60625 | PRPF38B | 55119 | 0 | 0 | 11 | |
| GSE74703 | PRPF38B | 55119 | 0 | 6 | 30 | |
| GSE74704 | PRPF38B | 55119 | 0 | 7 | 13 | |
| TCGA | PRPF38B | 55119 | 8 | 26 | 62 |
Total number of gains: 26; Total number of losses: 81; Total Number of normals: 381.
Somatic mutations of PRPF38B:
Generating mutation plots.
Highly correlated genes for PRPF38B:
Showing top 20/273 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| PRPF38B | CUL2 | 0.78592 | 3 | 0 | 3 |
| PRPF38B | UBE3C | 0.78122 | 3 | 0 | 3 |
| PRPF38B | JAK2 | 0.751403 | 3 | 0 | 3 |
| PRPF38B | PRADC1 | 0.722639 | 3 | 0 | 3 |
| PRPF38B | PSMC6 | 0.717561 | 3 | 0 | 3 |
| PRPF38B | IDI1 | 0.715761 | 3 | 0 | 3 |
| PRPF38B | CRK | 0.702331 | 3 | 0 | 3 |
| PRPF38B | GTF3C6 | 0.701947 | 3 | 0 | 3 |
| PRPF38B | RBM7 | 0.696315 | 4 | 0 | 4 |
| PRPF38B | MAT2B | 0.695712 | 3 | 0 | 3 |
| PRPF38B | SGMS2 | 0.689172 | 4 | 0 | 4 |
| PRPF38B | KCTD15 | 0.688671 | 3 | 0 | 3 |
| PRPF38B | ALAS1 | 0.682455 | 3 | 0 | 3 |
| PRPF38B | GOT1 | 0.680263 | 3 | 0 | 3 |
| PRPF38B | EPG5 | 0.680196 | 3 | 0 | 3 |
| PRPF38B | ZNF436 | 0.678737 | 3 | 0 | 3 |
| PRPF38B | NTAN1 | 0.67676 | 3 | 0 | 3 |
| PRPF38B | STXBP5 | 0.671002 | 3 | 0 | 3 |
| PRPF38B | REEP3 | 0.670906 | 4 | 0 | 3 |
| PRPF38B | PHKB | 0.666533 | 3 | 0 | 3 |
For details and further investigation, click here
