| Full name: RAB42, member RAS oncogene family | Alias Symbol: MGC45806 | ||
| Type: protein-coding gene | Cytoband: 1p35.3 | ||
| Entrez ID: 115273 | HGNC ID: HGNC:28702 | Ensembl Gene: ENSG00000188060 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of RAB42:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RAB42 | 115273 | 1552846_s_at | 0.0285 | 0.9329 | |
| GSE26886 | RAB42 | 115273 | 1552846_s_at | 0.1346 | 0.4240 | |
| GSE45670 | RAB42 | 115273 | 1552846_s_at | -0.1821 | 0.1714 | |
| GSE53622 | RAB42 | 115273 | 59438 | 0.7904 | 0.0000 | |
| GSE53624 | RAB42 | 115273 | 59438 | 1.1804 | 0.0000 | |
| GSE63941 | RAB42 | 115273 | 1552846_s_at | -0.0811 | 0.8282 | |
| GSE77861 | RAB42 | 115273 | 1552846_s_at | -0.2168 | 0.0295 | |
| GSE97050 | RAB42 | 115273 | A_23_P434919 | 0.2229 | 0.3983 | |
| SRP007169 | RAB42 | 115273 | RNAseq | 2.0200 | 0.0247 | |
| SRP064894 | RAB42 | 115273 | RNAseq | 0.9138 | 0.0065 | |
| SRP133303 | RAB42 | 115273 | RNAseq | 0.5190 | 0.0001 | |
| SRP159526 | RAB42 | 115273 | RNAseq | 0.5068 | 0.2741 | |
| SRP193095 | RAB42 | 115273 | RNAseq | 0.4240 | 0.0020 | |
| SRP219564 | RAB42 | 115273 | RNAseq | 0.6398 | 0.1770 | |
| TCGA | RAB42 | 115273 | RNAseq | 1.0934 | 0.0000 |
Upregulated datasets: 3; Downregulated datasets: 0.
Survival by RAB42 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of RAB42:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RAB42 | 115273 | 0 | 6 | 24 | |
| GSE20123 | RAB42 | 115273 | 0 | 5 | 25 | |
| GSE43470 | RAB42 | 115273 | 3 | 6 | 34 | |
| GSE46452 | RAB42 | 115273 | 5 | 1 | 53 | |
| GSE47630 | RAB42 | 115273 | 8 | 3 | 29 | |
| GSE54993 | RAB42 | 115273 | 2 | 1 | 67 | |
| GSE54994 | RAB42 | 115273 | 10 | 4 | 39 | |
| GSE60625 | RAB42 | 115273 | 0 | 0 | 11 | |
| GSE74703 | RAB42 | 115273 | 2 | 4 | 30 | |
| GSE74704 | RAB42 | 115273 | 0 | 0 | 20 | |
| TCGA | RAB42 | 115273 | 11 | 21 | 64 |
Total number of gains: 41; Total number of losses: 51; Total Number of normals: 396.
Somatic mutations of RAB42:
Generating mutation plots.
Highly correlated genes for RAB42:
Showing top 20/79 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RAB42 | ACAA1 | 0.745868 | 3 | 0 | 3 |
| RAB42 | C3AR1 | 0.741101 | 3 | 0 | 3 |
| RAB42 | TMEM200A | 0.735853 | 3 | 0 | 3 |
| RAB42 | CNP | 0.730831 | 3 | 0 | 3 |
| RAB42 | FCGR3A | 0.722085 | 3 | 0 | 3 |
| RAB42 | UCHL3 | 0.719994 | 3 | 0 | 3 |
| RAB42 | MYD88 | 0.719305 | 3 | 0 | 3 |
| RAB42 | MAP3K5 | 0.705421 | 3 | 0 | 3 |
| RAB42 | GPR19 | 0.702087 | 3 | 0 | 3 |
| RAB42 | NXPH1 | 0.700008 | 3 | 0 | 3 |
| RAB42 | CHST11 | 0.699475 | 3 | 0 | 3 |
| RAB42 | CD82 | 0.693832 | 3 | 0 | 3 |
| RAB42 | CERKL | 0.691855 | 3 | 0 | 3 |
| RAB42 | CTSZ | 0.689931 | 3 | 0 | 3 |
| RAB42 | CLEC4A | 0.687778 | 3 | 0 | 3 |
| RAB42 | TRPV2 | 0.685925 | 3 | 0 | 3 |
| RAB42 | CCRL2 | 0.681379 | 3 | 0 | 3 |
| RAB42 | CXXC5 | 0.680213 | 3 | 0 | 3 |
| RAB42 | SPIN4 | 0.676199 | 3 | 0 | 3 |
| RAB42 | C17orf67 | 0.676049 | 3 | 0 | 3 |
For details and further investigation, click here
