| Full name: RNA binding motif protein 47 | Alias Symbol: FLJ20273|NET18 | ||
| Type: protein-coding gene | Cytoband: 4p14 | ||
| Entrez ID: 54502 | HGNC ID: HGNC:30358 | Ensembl Gene: ENSG00000163694 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of RBM47:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RBM47 | 54502 | 218035_s_at | -0.5023 | 0.5465 | |
| GSE20347 | RBM47 | 54502 | 218035_s_at | -1.8865 | 0.0000 | |
| GSE23400 | RBM47 | 54502 | 218035_s_at | -1.5769 | 0.0000 | |
| GSE26886 | RBM47 | 54502 | 218035_s_at | -2.4976 | 0.0000 | |
| GSE29001 | RBM47 | 54502 | 218035_s_at | -1.9377 | 0.0001 | |
| GSE38129 | RBM47 | 54502 | 218035_s_at | -1.2361 | 0.0005 | |
| GSE45670 | RBM47 | 54502 | 218035_s_at | -0.2704 | 0.3387 | |
| GSE53622 | RBM47 | 54502 | 114050 | -1.2816 | 0.0000 | |
| GSE53624 | RBM47 | 54502 | 49718 | -1.9367 | 0.0000 | |
| GSE63941 | RBM47 | 54502 | 218035_s_at | 3.4100 | 0.0002 | |
| GSE77861 | RBM47 | 54502 | 218035_s_at | -1.4004 | 0.0003 | |
| GSE97050 | RBM47 | 54502 | A_24_P226108 | 0.0123 | 0.9898 | |
| SRP007169 | RBM47 | 54502 | RNAseq | -2.3800 | 0.0000 | |
| SRP008496 | RBM47 | 54502 | RNAseq | -2.5204 | 0.0000 | |
| SRP064894 | RBM47 | 54502 | RNAseq | -1.7860 | 0.0000 | |
| SRP133303 | RBM47 | 54502 | RNAseq | -1.4510 | 0.0000 | |
| SRP159526 | RBM47 | 54502 | RNAseq | -2.1783 | 0.0000 | |
| SRP193095 | RBM47 | 54502 | RNAseq | -1.7276 | 0.0000 | |
| SRP219564 | RBM47 | 54502 | RNAseq | -1.4626 | 0.0384 | |
| TCGA | RBM47 | 54502 | RNAseq | -0.4377 | 0.0000 |
Upregulated datasets: 1; Downregulated datasets: 15.
Survival by RBM47 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of RBM47:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RBM47 | 54502 | 1 | 16 | 13 | |
| GSE20123 | RBM47 | 54502 | 1 | 16 | 13 | |
| GSE43470 | RBM47 | 54502 | 0 | 15 | 28 | |
| GSE46452 | RBM47 | 54502 | 1 | 36 | 22 | |
| GSE47630 | RBM47 | 54502 | 1 | 19 | 20 | |
| GSE54993 | RBM47 | 54502 | 7 | 0 | 63 | |
| GSE54994 | RBM47 | 54502 | 4 | 10 | 39 | |
| GSE60625 | RBM47 | 54502 | 0 | 0 | 11 | |
| GSE74703 | RBM47 | 54502 | 0 | 12 | 24 | |
| GSE74704 | RBM47 | 54502 | 0 | 9 | 11 | |
| TCGA | RBM47 | 54502 | 10 | 45 | 41 |
Total number of gains: 25; Total number of losses: 178; Total Number of normals: 285.
Somatic mutations of RBM47:
Generating mutation plots.
Highly correlated genes for RBM47:
Showing top 20/1409 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RBM47 | CLIC3 | 0.829483 | 9 | 0 | 9 |
| RBM47 | ARHGAP32 | 0.822812 | 11 | 0 | 11 |
| RBM47 | ULK3 | 0.821789 | 6 | 0 | 6 |
| RBM47 | CXCR2 | 0.818925 | 10 | 0 | 10 |
| RBM47 | S100A16 | 0.818578 | 7 | 0 | 7 |
| RBM47 | UBL3 | 0.818249 | 10 | 0 | 10 |
| RBM47 | ZNRF1 | 0.816861 | 4 | 0 | 4 |
| RBM47 | EPS8L1 | 0.816735 | 12 | 0 | 12 |
| RBM47 | C1orf116 | 0.81382 | 12 | 0 | 12 |
| RBM47 | TMOD3 | 0.81049 | 11 | 0 | 11 |
| RBM47 | RAB27B | 0.807929 | 11 | 0 | 11 |
| RBM47 | NT5C2 | 0.805869 | 11 | 0 | 11 |
| RBM47 | CHP1 | 0.804558 | 10 | 0 | 10 |
| RBM47 | CCNYL1 | 0.804032 | 4 | 0 | 4 |
| RBM47 | EVPL | 0.801536 | 12 | 0 | 12 |
| RBM47 | RASSF5 | 0.801161 | 7 | 0 | 7 |
| RBM47 | SCNN1B | 0.79809 | 11 | 0 | 11 |
| RBM47 | CDS1 | 0.797793 | 12 | 0 | 12 |
| RBM47 | RAB11A | 0.797055 | 11 | 0 | 11 |
| RBM47 | OCLN | 0.795974 | 12 | 0 | 12 |
For details and further investigation, click here
