| Full name: small nucleolar RNA, C/D box 89 | Alias Symbol: HBII-289 | ||
| Type: non-coding RNA | Cytoband: 2q11.2 | ||
| Entrez ID: 692205 | HGNC ID: HGNC:32750 | Ensembl Gene: ENSG00000212283 | OMIM ID: |
Expression of SNORD89:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SNORD89 | 692205 | 235536_at | 0.1491 | 0.8271 | |
| GSE26886 | SNORD89 | 692205 | 235536_at | -0.5463 | 0.0526 | |
| GSE45670 | SNORD89 | 692205 | 235536_at | -0.0869 | 0.6159 | |
| GSE63941 | SNORD89 | 692205 | 235536_at | -0.3334 | 0.4623 | |
| GSE77861 | SNORD89 | 692205 | 235536_at | -0.1919 | 0.5519 | |
| SRP007169 | SNORD89 | 692205 | RNAseq | -0.4232 | 0.7699 | |
| SRP008496 | SNORD89 | 692205 | RNAseq | -0.7336 | 0.5543 | |
| SRP133303 | SNORD89 | 692205 | RNAseq | 0.0107 | 0.9673 | |
| SRP159526 | SNORD89 | 692205 | RNAseq | -0.2326 | 0.6306 | |
| SRP193095 | SNORD89 | 692205 | RNAseq | -1.0844 | 0.0010 | |
| SRP219564 | SNORD89 | 692205 | RNAseq | 0.4402 | 0.4202 |
Upregulated datasets: 0; Downregulated datasets: 1.
Survival by SNORD89 expression:
 |
| TCGA |
Note: Click image to view full size file.
Copy number change of SNORD89:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SNORD89 | 692205 | 5 | 2 | 23 | |
| GSE20123 | SNORD89 | 692205 | 5 | 2 | 23 | |
| GSE43470 | SNORD89 | 692205 | 5 | 1 | 37 | |
| GSE46452 | SNORD89 | 692205 | 1 | 4 | 54 | |
| GSE47630 | SNORD89 | 692205 | 7 | 0 | 33 | |
| GSE54993 | SNORD89 | 692205 | 0 | 6 | 64 | |
| GSE54994 | SNORD89 | 692205 | 11 | 0 | 42 | |
| GSE60625 | SNORD89 | 692205 | 0 | 3 | 8 | |
| GSE74703 | SNORD89 | 692205 | 5 | 1 | 30 | |
| GSE74704 | SNORD89 | 692205 | 3 | 1 | 16 | |
| TCGA | SNORD89 | 692205 | 35 | 5 | 56 |
Total number of gains: 77; Total number of losses: 25; Total Number of normals: 386.
Somatic mutations of SNORD89:
Generating mutation plots.
Highly correlated genes for SNORD89:
Showing top 20/23 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SNORD89 | FAM83C | 0.70988 | 3 | 0 | 3 |
| SNORD89 | PROM2 | 0.674292 | 3 | 0 | 3 |
| SNORD89 | OXNAD1 | 0.659846 | 3 | 0 | 3 |
| SNORD89 | FAM126B | 0.640587 | 3 | 0 | 3 |
| SNORD89 | LNX2 | 0.635639 | 4 | 0 | 3 |
| SNORD89 | ZBTB43 | 0.619985 | 3 | 0 | 3 |
| SNORD89 | FAM98A | 0.610211 | 3 | 0 | 3 |
| SNORD89 | HIBCH | 0.610042 | 4 | 0 | 3 |
| SNORD89 | CHFR | 0.602972 | 4 | 0 | 3 |
| SNORD89 | GFOD2 | 0.597288 | 3 | 0 | 3 |
| SNORD89 | HMGCR | 0.596597 | 3 | 0 | 3 |
| SNORD89 | MFSD6 | 0.591181 | 3 | 0 | 3 |
| SNORD89 | NAA20 | 0.589975 | 3 | 0 | 3 |
| SNORD89 | PDE12 | 0.583417 | 4 | 0 | 3 |
| SNORD89 | ACER3 | 0.578952 | 3 | 0 | 3 |
| SNORD89 | FAM110C | 0.578217 | 4 | 0 | 3 |
| SNORD89 | MYD88 | 0.577089 | 3 | 0 | 3 |
| SNORD89 | CD2AP | 0.570692 | 3 | 0 | 3 |
| SNORD89 | RNF149 | 0.566709 | 5 | 0 | 3 |
| SNORD89 | ACAA1 | 0.537574 | 4 | 0 | 3 |
For details and further investigation, click here
