| Full name: SWT1 RNA endoribonuclease homolog | Alias Symbol: FLJ20121|HsSwt1 | ||
| Type: protein-coding gene | Cytoband: 1q25.3 | ||
| Entrez ID: 54823 | HGNC ID: HGNC:16785 | Ensembl Gene: ENSG00000116668 | OMIM ID: |
Expression of SWT1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SWT1 | 54823 | 223548_at | 0.3250 | 0.2216 | |
| GSE26886 | SWT1 | 54823 | 223548_at | 0.2289 | 0.1814 | |
| GSE45670 | SWT1 | 54823 | 223548_at | 0.1674 | 0.1514 | |
| GSE53622 | SWT1 | 54823 | 30192 | 0.1113 | 0.1434 | |
| GSE53624 | SWT1 | 54823 | 30192 | 0.3130 | 0.0000 | |
| GSE63941 | SWT1 | 54823 | 223548_at | -0.1097 | 0.8530 | |
| GSE77861 | SWT1 | 54823 | 223548_at | 0.0919 | 0.4251 | |
| GSE97050 | SWT1 | 54823 | A_33_P3367062 | -0.6485 | 0.1965 | |
| SRP007169 | SWT1 | 54823 | RNAseq | 0.2841 | 0.4788 | |
| SRP008496 | SWT1 | 54823 | RNAseq | 0.7154 | 0.0308 | |
| SRP064894 | SWT1 | 54823 | RNAseq | 0.2460 | 0.1872 | |
| SRP133303 | SWT1 | 54823 | RNAseq | -0.1361 | 0.3803 | |
| SRP159526 | SWT1 | 54823 | RNAseq | 0.1384 | 0.7527 | |
| SRP193095 | SWT1 | 54823 | RNAseq | 0.0340 | 0.8206 | |
| SRP219564 | SWT1 | 54823 | RNAseq | 0.2137 | 0.5885 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by SWT1 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of SWT1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SWT1 | 54823 | 12 | 0 | 18 | |
| GSE20123 | SWT1 | 54823 | 12 | 0 | 18 | |
| GSE43470 | SWT1 | 54823 | 7 | 1 | 35 | |
| GSE46452 | SWT1 | 54823 | 3 | 1 | 55 | |
| GSE47630 | SWT1 | 54823 | 14 | 0 | 26 | |
| GSE54993 | SWT1 | 54823 | 0 | 6 | 64 | |
| GSE54994 | SWT1 | 54823 | 15 | 0 | 38 | |
| GSE60625 | SWT1 | 54823 | 0 | 0 | 11 | |
| GSE74703 | SWT1 | 54823 | 7 | 1 | 28 | |
| GSE74704 | SWT1 | 54823 | 5 | 0 | 15 | |
| TCGA | SWT1 | 54823 | 40 | 4 | 52 |
Total number of gains: 115; Total number of losses: 13; Total Number of normals: 360.
Somatic mutations of SWT1:
Generating mutation plots.
Highly correlated genes for SWT1:
Showing top 20/509 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SWT1 | ALMS1 | 0.802616 | 3 | 0 | 3 |
| SWT1 | TAF6 | 0.784869 | 3 | 0 | 3 |
| SWT1 | PACS1 | 0.766524 | 3 | 0 | 3 |
| SWT1 | SPATA2 | 0.763788 | 3 | 0 | 3 |
| SWT1 | MICU1 | 0.760904 | 3 | 0 | 3 |
| SWT1 | TMEM201 | 0.750604 | 3 | 0 | 3 |
| SWT1 | DYNLRB1 | 0.747154 | 3 | 0 | 3 |
| SWT1 | USP1 | 0.744731 | 3 | 0 | 3 |
| SWT1 | B4GALT2 | 0.741989 | 3 | 0 | 3 |
| SWT1 | ZNF473 | 0.737043 | 3 | 0 | 3 |
| SWT1 | SEMA3C | 0.736838 | 3 | 0 | 3 |
| SWT1 | GLIS3 | 0.733508 | 3 | 0 | 3 |
| SWT1 | SMARCA5 | 0.733429 | 3 | 0 | 3 |
| SWT1 | VAPB | 0.727448 | 3 | 0 | 3 |
| SWT1 | MTOR | 0.725814 | 3 | 0 | 3 |
| SWT1 | DYRK2 | 0.725339 | 3 | 0 | 3 |
| SWT1 | C12orf43 | 0.723372 | 3 | 0 | 3 |
| SWT1 | TIA1 | 0.721614 | 3 | 0 | 3 |
| SWT1 | AGTRAP | 0.72067 | 3 | 0 | 3 |
| SWT1 | GUSB | 0.718856 | 4 | 0 | 3 |
For details and further investigation, click here
