| Full name: TTC28 antisense RNA 1 | Alias Symbol: KIAA1648 | ||
| Type: non-coding RNA | Cytoband: 22q12.1 | ||
| Entrez ID: 284900 | HGNC ID: HGNC:29336 | Ensembl Gene: ENSG00000235954 | OMIM ID: |
Expression of TTC28-AS1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | TTC28-AS1 | 284900 | 244189_at | -0.3022 | 0.3817 | |
| GSE26886 | TTC28-AS1 | 284900 | 244189_at | 1.3605 | 0.0000 | |
| GSE45670 | TTC28-AS1 | 284900 | 244189_at | 0.1642 | 0.4945 | |
| GSE53622 | TTC28-AS1 | 284900 | 95375 | 0.7038 | 0.0000 | |
| GSE53624 | TTC28-AS1 | 284900 | 95375 | 0.9689 | 0.0000 | |
| GSE63941 | TTC28-AS1 | 284900 | 244189_at | 0.6553 | 0.2250 | |
| GSE77861 | TTC28-AS1 | 284900 | 1555871_at | -0.0280 | 0.8078 | |
| SRP007169 | TTC28-AS1 | 284900 | RNAseq | 1.1483 | 0.0413 | |
| SRP064894 | TTC28-AS1 | 284900 | RNAseq | 0.3125 | 0.0722 | |
| SRP133303 | TTC28-AS1 | 284900 | RNAseq | 0.2508 | 0.0314 | |
| SRP159526 | TTC28-AS1 | 284900 | RNAseq | 0.9247 | 0.0486 | |
| SRP193095 | TTC28-AS1 | 284900 | RNAseq | 0.3333 | 0.0024 | |
| SRP219564 | TTC28-AS1 | 284900 | RNAseq | 0.3443 | 0.3147 |
Upregulated datasets: 2; Downregulated datasets: 0.
Survival by TTC28-AS1 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of TTC28-AS1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | TTC28-AS1 | 284900 | 2 | 5 | 23 | |
| GSE20123 | TTC28-AS1 | 284900 | 2 | 4 | 24 | |
| GSE43470 | TTC28-AS1 | 284900 | 3 | 6 | 34 | |
| GSE46452 | TTC28-AS1 | 284900 | 31 | 1 | 27 | |
| GSE47630 | TTC28-AS1 | 284900 | 8 | 5 | 27 | |
| GSE54993 | TTC28-AS1 | 284900 | 3 | 6 | 61 | |
| GSE54994 | TTC28-AS1 | 284900 | 11 | 8 | 34 | |
| GSE60625 | TTC28-AS1 | 284900 | 5 | 0 | 6 | |
| GSE74703 | TTC28-AS1 | 284900 | 3 | 5 | 28 | |
| GSE74704 | TTC28-AS1 | 284900 | 0 | 1 | 19 |
Total number of gains: 68; Total number of losses: 41; Total Number of normals: 283.
Somatic mutations of TTC28-AS1:
Generating mutation plots.
Highly correlated genes for TTC28-AS1:
Showing top 20/98 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| TTC28-AS1 | IGFBP3 | 0.692336 | 3 | 0 | 3 |
| TTC28-AS1 | PLOD1 | 0.690783 | 3 | 0 | 3 |
| TTC28-AS1 | LPCAT1 | 0.685374 | 3 | 0 | 3 |
| TTC28-AS1 | SPP1 | 0.664933 | 3 | 0 | 3 |
| TTC28-AS1 | DNTTIP1 | 0.643731 | 3 | 0 | 3 |
| TTC28-AS1 | TGFBI | 0.640536 | 3 | 0 | 3 |
| TTC28-AS1 | ZNF579 | 0.636219 | 3 | 0 | 3 |
| TTC28-AS1 | PFN2 | 0.634781 | 4 | 0 | 3 |
| TTC28-AS1 | WDR54 | 0.634754 | 3 | 0 | 3 |
| TTC28-AS1 | COL5A1 | 0.633086 | 3 | 0 | 3 |
| TTC28-AS1 | TP53I13 | 0.632696 | 3 | 0 | 3 |
| TTC28-AS1 | MFAP2 | 0.632219 | 3 | 0 | 3 |
| TTC28-AS1 | MMP1 | 0.62837 | 3 | 0 | 3 |
| TTC28-AS1 | ZNF599 | 0.627244 | 3 | 0 | 3 |
| TTC28-AS1 | EXT1 | 0.626945 | 3 | 0 | 3 |
| TTC28-AS1 | TRIO | 0.626824 | 3 | 0 | 3 |
| TTC28-AS1 | FOXC1 | 0.626769 | 3 | 0 | 3 |
| TTC28-AS1 | SLC5A12 | 0.625638 | 4 | 0 | 3 |
| TTC28-AS1 | PLOD3 | 0.625046 | 3 | 0 | 3 |
| TTC28-AS1 | SIN3A | 0.624354 | 4 | 0 | 3 |
For details and further investigation, click here
