| Full name: trans-golgi network vesicle protein 23 homolog B | Alias Symbol: CGI-148|YDR084C | ||
| Type: protein-coding gene | Cytoband: 17p11.2 | ||
| Entrez ID: 51030 | HGNC ID: HGNC:20399 | Ensembl Gene: ENSG00000171928 | OMIM ID: |
Expression of TVP23B:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | TVP23B | 51030 | 218446_s_at | -0.6154 | 0.3026 | |
| GSE20347 | TVP23B | 51030 | 218446_s_at | -0.6526 | 0.0005 | |
| GSE23400 | TVP23B | 51030 | 218446_s_at | -0.2998 | 0.0067 | |
| GSE26886 | TVP23B | 51030 | 218446_s_at | -0.8449 | 0.0026 | |
| GSE29001 | TVP23B | 51030 | 218446_s_at | -0.5718 | 0.0456 | |
| GSE38129 | TVP23B | 51030 | 218446_s_at | -0.3602 | 0.1121 | |
| GSE45670 | TVP23B | 51030 | 218446_s_at | -0.2002 | 0.1777 | |
| GSE63941 | TVP23B | 51030 | 218446_s_at | -0.4437 | 0.4330 | |
| GSE77861 | TVP23B | 51030 | 218446_s_at | -0.5237 | 0.1425 | |
| SRP007169 | TVP23B | 51030 | RNAseq | -2.0858 | 0.0000 | |
| SRP008496 | TVP23B | 51030 | RNAseq | -1.7013 | 0.0000 | |
| SRP064894 | TVP23B | 51030 | RNAseq | -0.1678 | 0.5908 | |
| SRP133303 | TVP23B | 51030 | RNAseq | -0.4445 | 0.0002 | |
| SRP159526 | TVP23B | 51030 | RNAseq | -0.5395 | 0.0608 | |
| SRP193095 | TVP23B | 51030 | RNAseq | -1.0219 | 0.0000 | |
| SRP219564 | TVP23B | 51030 | RNAseq | -0.9112 | 0.0950 |
Upregulated datasets: 0; Downregulated datasets: 3.
Copy number change of TVP23B:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | TVP23B | 51030 | 3 | 3 | 24 | |
| GSE20123 | TVP23B | 51030 | 3 | 4 | 23 | |
| GSE43470 | TVP23B | 51030 | 1 | 5 | 37 | |
| GSE46452 | TVP23B | 51030 | 34 | 1 | 24 | |
| GSE47630 | TVP23B | 51030 | 7 | 1 | 32 | |
| GSE54993 | TVP23B | 51030 | 3 | 3 | 64 | |
| GSE54994 | TVP23B | 51030 | 6 | 6 | 41 | |
| GSE60625 | TVP23B | 51030 | 4 | 0 | 7 | |
| GSE74703 | TVP23B | 51030 | 1 | 2 | 33 | |
| GSE74704 | TVP23B | 51030 | 2 | 1 | 17 | |
| TCGA | TVP23B | 51030 | 18 | 24 | 54 |
Total number of gains: 82; Total number of losses: 50; Total Number of normals: 356.
Somatic mutations of TVP23B:
Generating mutation plots.
Highly correlated genes for TVP23B:
Showing top 20/732 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| TVP23B | PRDX5 | 0.746694 | 3 | 0 | 3 |
| TVP23B | XG | 0.73175 | 3 | 0 | 3 |
| TVP23B | EPN3 | 0.725886 | 3 | 0 | 3 |
| TVP23B | NIPSNAP3A | 0.719512 | 3 | 0 | 3 |
| TVP23B | MPZL3 | 0.715041 | 3 | 0 | 3 |
| TVP23B | HACE1 | 0.709902 | 3 | 0 | 3 |
| TVP23B | ZNF431 | 0.709704 | 3 | 0 | 3 |
| TVP23B | LACC1 | 0.706627 | 4 | 0 | 4 |
| TVP23B | SLC25A43 | 0.698238 | 3 | 0 | 3 |
| TVP23B | UFL1 | 0.694841 | 9 | 0 | 9 |
| TVP23B | MREG | 0.69104 | 7 | 0 | 7 |
| TVP23B | MCEE | 0.690272 | 3 | 0 | 3 |
| TVP23B | HSPA4L | 0.688798 | 4 | 0 | 4 |
| TVP23B | BTF3 | 0.682838 | 3 | 0 | 3 |
| TVP23B | ZDHHC20 | 0.682705 | 4 | 0 | 4 |
| TVP23B | FRMD4B | 0.681724 | 8 | 0 | 8 |
| TVP23B | SCOC | 0.680591 | 4 | 0 | 4 |
| TVP23B | ZDHHC21 | 0.680348 | 3 | 0 | 3 |
| TVP23B | NDFIP2 | 0.679189 | 4 | 0 | 3 |
| TVP23B | FAR1 | 0.678697 | 3 | 0 | 3 |
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