| Full name: urothelial cancer associated 1 | Alias Symbol: LINC00178|CUDR|UCAT1|onco-lncRNA-36 | ||
| Type: non-coding RNA | Cytoband: 19p13.12 | ||
| Entrez ID: 652995 | HGNC ID: HGNC:37126 | Ensembl Gene: ENSG00000214049 | OMIM ID: 617500 |
| Drug and gene relationship at DGIdb | |||
Expression of UCA1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | UCA1 | 652995 | 227919_at | -0.5322 | 0.3093 | |
| GSE26886 | UCA1 | 652995 | 227919_at | -1.5016 | 0.0000 | |
| GSE45670 | UCA1 | 652995 | 227919_at | -0.0219 | 0.9496 | |
| GSE53622 | UCA1 | 652995 | 148078 | -0.5326 | 0.0415 | |
| GSE53624 | UCA1 | 652995 | 78977 | 0.0862 | 0.4819 | |
| GSE63941 | UCA1 | 652995 | 227919_at | 3.4086 | 0.0863 | |
| GSE77861 | UCA1 | 652995 | 227919_at | -0.2775 | 0.0834 | |
| SRP007169 | UCA1 | 652995 | RNAseq | -0.6086 | 0.5947 | |
| SRP064894 | UCA1 | 652995 | RNAseq | -1.8923 | 0.0000 | |
| SRP133303 | UCA1 | 652995 | RNAseq | -0.3160 | 0.1888 | |
| SRP159526 | UCA1 | 652995 | RNAseq | -2.0095 | 0.0000 | |
| SRP219564 | UCA1 | 652995 | RNAseq | -0.2180 | 0.8061 | |
| TCGA | UCA1 | 652995 | RNAseq | 0.8955 | 0.0856 |
Upregulated datasets: 0; Downregulated datasets: 3.
Survival by UCA1 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of UCA1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | UCA1 | 652995 | 4 | 2 | 24 | |
| GSE20123 | UCA1 | 652995 | 3 | 1 | 26 | |
| GSE43470 | UCA1 | 652995 | 2 | 5 | 36 | |
| GSE46452 | UCA1 | 652995 | 47 | 1 | 11 | |
| GSE47630 | UCA1 | 652995 | 4 | 8 | 28 | |
| GSE54993 | UCA1 | 652995 | 15 | 4 | 51 | |
| GSE54994 | UCA1 | 652995 | 6 | 14 | 33 | |
| GSE60625 | UCA1 | 652995 | 9 | 0 | 2 | |
| GSE74703 | UCA1 | 652995 | 2 | 4 | 30 | |
| GSE74704 | UCA1 | 652995 | 0 | 1 | 19 | |
| TCGA | UCA1 | 652995 | 18 | 12 | 66 |
Total number of gains: 110; Total number of losses: 52; Total Number of normals: 326.
Somatic mutations of UCA1:
Generating mutation plots.
Highly correlated genes for UCA1:
Showing top 20/466 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| UCA1 | STAU2 | 0.724018 | 3 | 0 | 3 |
| UCA1 | EVPLL | 0.709121 | 3 | 0 | 3 |
| UCA1 | EP300-AS1 | 0.70713 | 3 | 0 | 3 |
| UCA1 | COBLL1 | 0.706379 | 3 | 0 | 3 |
| UCA1 | MAPT | 0.704952 | 3 | 0 | 3 |
| UCA1 | GALNT12 | 0.699764 | 3 | 0 | 3 |
| UCA1 | TMEM154 | 0.697485 | 4 | 0 | 4 |
| UCA1 | GUF1 | 0.693667 | 3 | 0 | 3 |
| UCA1 | MPZL3 | 0.693043 | 6 | 0 | 5 |
| UCA1 | KCNK7 | 0.692148 | 3 | 0 | 3 |
| UCA1 | GBP6 | 0.690487 | 3 | 0 | 3 |
| UCA1 | ORMDL2 | 0.687774 | 3 | 0 | 3 |
| UCA1 | ARHGAP32 | 0.6863 | 5 | 0 | 5 |
| UCA1 | CD2AP | 0.682929 | 3 | 0 | 3 |
| UCA1 | STXBP5 | 0.677024 | 4 | 0 | 4 |
| UCA1 | CAB39L | 0.676753 | 3 | 0 | 3 |
| UCA1 | MAGI3 | 0.671408 | 3 | 0 | 3 |
| UCA1 | TMEM184A | 0.670461 | 3 | 0 | 3 |
| UCA1 | STRN | 0.670162 | 5 | 0 | 5 |
| UCA1 | ALAD | 0.666977 | 3 | 0 | 3 |
For details and further investigation, click here
