AP3D1

 

Full name: adaptor related protein complex 3 subunit delta 1 Alias Symbol: ADTD
Type: protein-coding gene Cytoband: 19p13.3
Entrez ID: 8943 HGNC ID: HGNC:568 Ensembl Gene: ENSG00000065000 OMIM ID: 607246
Drug and gene relationship at DGIdb
Screen Evidence:
  • Knocking out of this gene by CRIPR/Cas9 screen found altered tolerance on DNA toxicity in Genotoxic Screens.

 

Expression of AP3D1:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 AP3D1 8943 206592_s_at 0.3221 0.2297
GSE20347 AP3D1 8943 206592_s_at -0.0007 0.9973
GSE23400 AP3D1 8943 206592_s_at 0.0809 0.1061
GSE26886 AP3D1 8943 206592_s_at 0.3182 0.0103
GSE29001 AP3D1 8943 206592_s_at -0.0733 0.7809
GSE38129 AP3D1 8943 206592_s_at 0.0901 0.3414
GSE45670 AP3D1 8943 206592_s_at 0.2522 0.0072
GSE53622 AP3D1 8943 15293 0.0721 0.3721
GSE53624 AP3D1 8943 15293 0.2626 0.0002
GSE63941 AP3D1 8943 206592_s_at -0.0520 0.8956
GSE77861 AP3D1 8943 206592_s_at 0.2600 0.1109
GSE97050 AP3D1 8943 A_33_P3571120 0.1001 0.8179
SRP007169 AP3D1 8943 RNAseq 0.3422 0.3837
SRP008496 AP3D1 8943 RNAseq 0.0826 0.7497
SRP064894 AP3D1 8943 RNAseq 0.0511 0.7069
SRP133303 AP3D1 8943 RNAseq 0.1400 0.4440
SRP159526 AP3D1 8943 RNAseq 0.0364 0.8751
SRP193095 AP3D1 8943 RNAseq 0.1647 0.1749
SRP219564 AP3D1 8943 RNAseq 0.0230 0.9118
TCGA AP3D1 8943 RNAseq -0.0457 0.2442

Upregulated datasets: 0; Downregulated datasets: 0.  


 

Survival by AP3D1 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  


Copy number change of AP3D1:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 AP3D1 8943 4 6 20
GSE20123 AP3D1 8943 4 5 21
GSE43470 AP3D1 8943 1 10 32
GSE46452 AP3D1 8943 47 1 11
GSE47630 AP3D1 8943 5 7 28
GSE54993 AP3D1 8943 16 3 51
GSE54994 AP3D1 8943 8 15 30
GSE60625 AP3D1 8943 9 0 2
GSE74703 AP3D1 8943 1 7 28
GSE74704 AP3D1 8943 3 3 14
TCGA AP3D1 8943 6 25 65

Total number of gains: 104; Total number of losses: 82; Total Number of normals: 302.  


 

Somatic mutations of AP3D1:

 

Generating mutation plots.

 

Highly correlated genes for AP3D1:

 

Showing top 20/708 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
AP3D1PPHLN10.834074303
AP3D1TOPBP10.832226303
AP3D1NFE2L10.793501303
AP3D1UBQLN40.769544303
AP3D1LSM100.767297303
AP3D1DNTTIP10.763426303
AP3D1MRTO40.760586303
AP3D1CDC25A0.755474303
AP3D1FAF20.754739404
AP3D1C3orf330.746379303
AP3D1NACC10.74277505
AP3D1ZNF8270.742333404
AP3D1INTS10.736631505
AP3D1DHX360.733255303
AP3D1ZNF4960.732547303
AP3D1MSL20.732171303
AP3D1GLI30.728175303
AP3D1TRUB20.727604303
AP3D1DERL10.725158404
AP3D1KIF230.723067303

For details and further investigation, click here