B2M

 

Full name: beta-2-microglobulin Alias Symbol: 
Type: protein-coding gene Cytoband: 15q21.1
Entrez ID: 567 HGNC ID: HGNC:914 Ensembl Gene: ENSG00000166710 OMIM ID: 109700
Drug and gene relationship at DGIdb
Screen Evidence:
  • This gene has been idenfitied as a common driver in this paper.
  • Knocking out of this gene by CRIPR/Cas9 screen found altered tolerance on DNA toxicity in Genotoxic Screens.

 

Expression of B2M:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 B2M 567 201891_s_at 0.0996 0.7016
GSE20347 B2M 567 201891_s_at 0.3062 0.0161
GSE23400 B2M 567 201891_s_at 0.2471 0.0009
GSE26886 B2M 567 201891_s_at 0.0327 0.8699
GSE29001 B2M 567 201891_s_at 0.1404 0.2100
GSE38129 B2M 567 201891_s_at 0.1498 0.0803
GSE45670 B2M 567 201891_s_at 0.2570 0.0089
GSE53622 B2M 567 11624 1.3041 0.0000
GSE53624 B2M 567 11624 1.0874 0.0000
GSE63941 B2M 567 216231_s_at -0.3632 0.3793
GSE77861 B2M 567 216231_s_at 0.2137 0.4472
GSE97050 B2M 567 A_23_P37441 0.9015 0.1134
SRP007169 B2M 567 RNAseq 0.5536 0.1931
SRP008496 B2M 567 RNAseq 0.4885 0.1101
SRP064894 B2M 567 RNAseq 0.7599 0.0004
SRP133303 B2M 567 RNAseq 0.6952 0.0021
SRP159526 B2M 567 RNAseq 0.0034 0.9957
SRP193095 B2M 567 RNAseq 0.0202 0.9337
SRP219564 B2M 567 RNAseq 0.7911 0.1324
TCGA B2M 567 RNAseq 0.0928 0.1088

Upregulated datasets: 2; Downregulated datasets: 0.  


 

Survival by B2M expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  


Copy number change of B2M:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 B2M 567 3 4 23
GSE20123 B2M 567 3 5 22
GSE43470 B2M 567 4 4 35
GSE46452 B2M 567 3 7 49
GSE47630 B2M 567 8 10 22
GSE54993 B2M 567 4 6 60
GSE54994 B2M 567 5 7 41
GSE60625 B2M 567 4 0 7
GSE74703 B2M 567 4 3 29
GSE74704 B2M 567 1 2 17
TCGA B2M 567 12 16 68

Total number of gains: 51; Total number of losses: 64; Total Number of normals: 373.  


 

Somatic mutations of B2M:

 

Generating mutation plots.

 

Highly correlated genes for B2M:

 

Showing top 20/415 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
B2MHLA-C0.73567812012
B2MHLA-B0.73345612012
B2MHLA-A0.71177912012
B2MFNDC10.703508303
B2MRNF2130.698107303
B2MPDIA30.683373404
B2MUSP410.665603303
B2MEPSTI10.662903808
B2MPDIA50.662868303
B2MHLA-F0.65944513011
B2MPSMB90.65503511010
B2MDDX600.65411413012
B2MTAP10.65063511011
B2MRUNX20.645989605
B2MSTAT10.64421913012
B2MIFI440.64364513013
B2MBTN3A30.638587908
B2MIFIH10.6359091108
B2MZNF4690.634108403
B2MTTYH30.632911504

For details and further investigation, click here