C16orf87

 

Full name: chromosome 16 open reading frame 87 Alias Symbol: 
Type: protein-coding gene Cytoband: 16q11.2
Entrez ID: 388272 HGNC ID: HGNC:33754 Ensembl Gene: ENSG00000155330 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of C16orf87:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 C16orf87 388272 226608_at 0.1297 0.8835
GSE26886 C16orf87 388272 226608_at -0.5563 0.0403
GSE45670 C16orf87 388272 226608_at 0.1572 0.4770
GSE53622 C16orf87 388272 135340 0.4705 0.0000
GSE53624 C16orf87 388272 135340 0.2139 0.0623
GSE63941 C16orf87 388272 226608_at -1.1285 0.0524
GSE77861 C16orf87 388272 226608_at 0.1735 0.5466
GSE97050 C16orf87 388272 A_23_P49279 0.0493 0.8836
SRP007169 C16orf87 388272 RNAseq 0.0654 0.8879
SRP008496 C16orf87 388272 RNAseq 0.6668 0.0413
SRP064894 C16orf87 388272 RNAseq -0.1673 0.4149
SRP133303 C16orf87 388272 RNAseq 0.4245 0.0003
SRP159526 C16orf87 388272 RNAseq 0.5531 0.0165
SRP193095 C16orf87 388272 RNAseq 0.1142 0.1659
SRP219564 C16orf87 388272 RNAseq 0.2954 0.4642
TCGA C16orf87 388272 RNAseq 0.3795 0.0000

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Survival by C16orf87 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of C16orf87:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 C16orf87 388272 2 1 27
GSE20123 C16orf87 388272 2 1 27
GSE43470 C16orf87 388272 2 7 34
GSE46452 C16orf87 388272 38 1 20
GSE47630 C16orf87 388272 11 7 22
GSE54993 C16orf87 388272 2 5 63
GSE54994 C16orf87 388272 6 10 37
GSE60625 C16orf87 388272 4 0 7
GSE74703 C16orf87 388272 2 4 30
GSE74704 C16orf87 388272 2 1 17
TCGA C16orf87 388272 29 11 56

Total number of gains: 100; Total number of losses: 48; Total Number of normals: 340.  

 

Somatic mutations of C16orf87:

 

Generating mutation plots.

 

Highly correlated genes for C16orf87:

 

Showing top 20/324 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
C16orf87GFM20.737993303
C16orf87GLS0.730543303
C16orf87TINF20.724478303
C16orf87RAPGEF60.722419303
C16orf87NSFL1C0.713465303
C16orf87RAD500.709452404
C16orf87CETN30.702424303
C16orf87TM2D30.700488303
C16orf87HECW20.689508303
C16orf87ALG140.685332303
C16orf87SNX140.683933303
C16orf87UGP20.683318303
C16orf87PEX30.683166303
C16orf87UHRF1BP1L0.680944303
C16orf87SRFBP10.679832404
C16orf87UXS10.679061303
C16orf87CCP1100.67817303
C16orf87DUSP140.677695404
C16orf87ADAT10.676657403
C16orf87MPP60.674885504

For details and further investigation, click here