COPB1

 

Full name: coatomer protein complex subunit beta 1 Alias Symbol: 
Type: protein-coding gene Cytoband: 11p15.2
Entrez ID: 1315 HGNC ID: HGNC:2231 Ensembl Gene: ENSG00000129083 OMIM ID: 600959
Drug and gene relationship at DGIdb

 

Expression of COPB1:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 COPB1 1315 201358_s_at 0.2352 0.3553
GSE20347 COPB1 1315 201358_s_at 0.0414 0.7755
GSE23400 COPB1 1315 201358_s_at 0.3347 0.0000
GSE26886 COPB1 1315 201358_s_at 0.6555 0.0005
GSE29001 COPB1 1315 201358_s_at 0.0105 0.9691
GSE38129 COPB1 1315 201358_s_at 0.0549 0.6015
GSE45670 COPB1 1315 201358_s_at 0.1843 0.0628
GSE53622 COPB1 1315 12439 -0.0304 0.6172
GSE53624 COPB1 1315 12439 0.0499 0.3468
GSE63941 COPB1 1315 201358_s_at -0.2513 0.4498
GSE77861 COPB1 1315 201358_s_at 0.4388 0.2658
GSE97050 COPB1 1315 A_33_P3287263 0.0820 0.8180
SRP007169 COPB1 1315 RNAseq -0.3964 0.2174
SRP008496 COPB1 1315 RNAseq -0.2058 0.3031
SRP064894 COPB1 1315 RNAseq -0.0701 0.7327
SRP133303 COPB1 1315 RNAseq 0.7923 0.0124
SRP159526 COPB1 1315 RNAseq -0.2962 0.2878
SRP193095 COPB1 1315 RNAseq -0.1749 0.1865
SRP219564 COPB1 1315 RNAseq 0.0187 0.9284
TCGA COPB1 1315 RNAseq -0.0101 0.8075

Upregulated datasets: 0; Downregulated datasets: 0.  


 

Survival by COPB1 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  


Copy number change of COPB1:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 COPB1 1315 1 10 19
GSE20123 COPB1 1315 1 10 19
GSE43470 COPB1 1315 1 5 37
GSE46452 COPB1 1315 7 5 47
GSE47630 COPB1 1315 3 11 26
GSE54993 COPB1 1315 3 1 66
GSE54994 COPB1 1315 4 12 37
GSE60625 COPB1 1315 0 0 11
GSE74703 COPB1 1315 1 3 32
GSE74704 COPB1 1315 0 9 11
TCGA COPB1 1315 12 31 53

Total number of gains: 33; Total number of losses: 97; Total Number of normals: 358.  


 

Somatic mutations of COPB1:

 

Generating mutation plots.

 

Highly correlated genes for COPB1:

 

Showing top 20/547 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
COPB1DUT0.769149303
COPB1SRRD0.765069303
COPB1CEP1200.737751303
COPB1AGMAT0.734928303
COPB1CSNK1G20.728983504
COPB1TNS40.726186303
COPB1TNFRSF10B0.718767504
COPB1PAIP10.713929303
COPB1RBBP60.712882303
COPB1MGAT4B0.711114303
COPB1KLF70.707533303
COPB1LRP5L0.706123303
COPB1PDIA60.706006403
COPB1TWSG10.704154303
COPB1CASP40.703891303
COPB1XRN10.703608303
COPB1CEP2500.696042303
COPB1MAPK60.695747504
COPB1WDR430.694602504
COPB1TOR1AIP20.694233404

For details and further investigation, click here